PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037901-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 408aa MW: 47113.3 Da PI: 5.2649

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037901-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.6	1.4e-22	40	135	1	76
trihelix 1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.ses 75 +Wt+++v++Li a+ +++++ ++++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +++t +++ AUR62037901-RA 40 KWTDNMVRLLIMAVYYIGDEAGNEAvvekkkpggggvgggggmlQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTaCKV 134 7************999999987666678899999999***********************************************9963555 PP trihelix 76 s 76 + AUR62037901-RA 135 V 135 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MTQLTNSDDD EPSCANDHEN SSLDGKRKGG SNISPWQRMK WTDNMVRLLI MAVYYIGDEA 60 GNEAVVEKKK PGGGGVGGGG GMLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK 120 RVNDILGRGT ACKVVENQTI PPNNSHRLGL GSEDHEDDDE DCDDEDDEDE FEDEDEEHEF 180 EGGPRKRAKT LGGNSSNTSQ ALQQLNGEMM GMLQDGSKNS WEKKQWMKTH LVKLEEQGLK 240 FQVQALELEK QRFKWIKFSS KKERELEKLK IDNERKRLEN ERMMLLLRQK EIELVGVEPQ 300 HPSNPSCDTQ CEMFNWVTTS TDLEGLELKI MEKDTEICEL EYEKKLKEDK IKKLQLKKDK 360 YCDALAGMKT EMEELKTQIR KRRKNERRMY LMLLLSWIVF GFSYVYG*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MTQLTNSDDD EPSCANDHEN SSLDGKRKGG SNISPWQRMK WTDNMVRLLI MAVYYIGDEA  60
GNEAVVEKKK PGGGGVGGGG GMLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK  120
RVNDILGRGT ACKVVENQTI PPNNSHRLGL GSEDHEDDDE DCDDEDDEDE FEDEDEEHEF  180
EGGPRKRAKT LGGNSSNTSQ ALQQLNGEMM GMLQDGSKNS WEKKQWMKTH LVKLEEQGLK  240
FQVQALELEK QRFKWIKFSS KKERELEKLK IDNERKRLEN ERMMLLLRQK EIELVGVEPQ  300
HPSNPSCDTQ CEMFNWVTTS TDLEGLELKI MEKDTEICEL EYEKKLKEDK IKKLQLKKDK  360
YCDALAGMKT EMEELKTQIR KRRKNERRMY LMLLLSWIVF GFSYVYG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	190	PRKRAKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	5e-39	Trihelix family protein