PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037546-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HB-other

Protein Properties

Length: 1196aa MW: 134256 Da PI: 7.3384

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037546-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.3	6e-09	37	83	8	54
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ q+++Le l+ +++p++++ e+ ++ lgLt +qV+ W+ rR + AUR62037546-RA 37 NPLQIQTLEYLYIDDKNPTRSRLEDYSSALGLTYEQVRRWYVERRRR 83 678******************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 1196 aa Download sequence
MAAQFHHNNG AFTLSPTTSL NDFDEDDDVG YTLFRKNPLQ IQTLEYLYID DKNPTRSRLE 60 DYSSALGLTY EQVRRWYVER RRRDNPDAGR NIGVNRSVQS TAKGKSKMKK KKNLSSLELG 120 EHGDFTIRPG LIQDMLYSSD HIFKKIFRKD GPPLGVEFDP LPETSFQGCN DIPDRRCCEV 180 ACQGEQRALK RRKVTKSAVL EAEQWNRMKT PMKKHGKGKG LMSDLQLVNY LASFRDNVGA 240 TKRGKVLARK NSQPGKTYGM GKGFMTASQL ANPDSKRRPL RRKIAAQRRS VNKVQEKKKP 300 IPQRRKVNLF NFAWNDLVLV LPGRTLVTYP GMYQVDSSQK ETQKARKDCC KIALDLASHD 360 ENLCSFPTKA DDEELELREL QAGPNPLTCG AHFANGGKIG NNGCSLCKGL LPKFPPESVR 420 MRKPFHMQPW NSSLELEKKL FKALHFLYTY AVMLDLYPFT LDDFAKAFHD KDSSLLGKLH 480 VCLLGLLLSD IQNEISNELS IHSNKNGMFL NLLHMTETQD SVVNFWKTSL NPLTWTDILR 540 QVLIAAGFGS RDGNQSKGCL TKETDHMAKY GLQPDTLKGK LFSILFEQGN SGMKVTELAK 600 SSQIVDLNLG KTEDELEDSI CSILASDITL FEKISSSTYR LRLASIMKKD EDALSDNEDC 660 GSIDDESRLS NSLSNNADCD SGISSSRPNM GHLSPESNPL SLSSVIDESH PGESWLLGLM 720 EGEYSDLSIE EKLNALLALI DLVRAGSSIR MEDPSAVLAE CVPRIYQHGS GGKIKRSTVK 780 RPSLLTSSFG DVTDSRRLSS DNCAVDSSVV LSTVCKEDRY SSMKKGLNGV GNGDALHPIQ 840 TIFLGSDRRY NRYWLFLGPC DADDPGHKQI YVESSEDGQW QVIDSEEALY GLLASLNGQG 900 RREAALLASL EKRMTFLAEE MMSRVPADFN VSQSTQSGLS EIDRTNEDSL SPISEIDNHS 960 LGETSFNAVT SSGAAPFIFE KTVEEEKKKY ERLQAYDSWI WNNFYSNLHA VRRGKRSFFD 1020 SWTRCGSCND LYWRDERHCK ACHTTFELDF DLEEKYAIHV AKCHAREDAD ICPMHKVLPS 1080 KLQALKAAIH VIEMFMPEGA LIGAWKKSAY KLWVRRLRRT SSLHELLQVL GDFVGSLNVD 1140 WVLQCNAIHK CESTVEDFVT HFQNMPQTSS AVALWLVKLD AFIALQLDER VVGTA*

Sequence ? help Back to Top

Protein Sequence Length: 1196 aa Download sequence

MAAQFHHNNG AFTLSPTTSL NDFDEDDDVG YTLFRKNPLQ IQTLEYLYID DKNPTRSRLE  60
DYSSALGLTY EQVRRWYVER RRRDNPDAGR NIGVNRSVQS TAKGKSKMKK KKNLSSLELG  120
EHGDFTIRPG LIQDMLYSSD HIFKKIFRKD GPPLGVEFDP LPETSFQGCN DIPDRRCCEV  180
ACQGEQRALK RRKVTKSAVL EAEQWNRMKT PMKKHGKGKG LMSDLQLVNY LASFRDNVGA  240
TKRGKVLARK NSQPGKTYGM GKGFMTASQL ANPDSKRRPL RRKIAAQRRS VNKVQEKKKP  300
IPQRRKVNLF NFAWNDLVLV LPGRTLVTYP GMYQVDSSQK ETQKARKDCC KIALDLASHD  360
ENLCSFPTKA DDEELELREL QAGPNPLTCG AHFANGGKIG NNGCSLCKGL LPKFPPESVR  420
MRKPFHMQPW NSSLELEKKL FKALHFLYTY AVMLDLYPFT LDDFAKAFHD KDSSLLGKLH  480
VCLLGLLLSD IQNEISNELS IHSNKNGMFL NLLHMTETQD SVVNFWKTSL NPLTWTDILR  540
QVLIAAGFGS RDGNQSKGCL TKETDHMAKY GLQPDTLKGK LFSILFEQGN SGMKVTELAK  600
SSQIVDLNLG KTEDELEDSI CSILASDITL FEKISSSTYR LRLASIMKKD EDALSDNEDC  660
GSIDDESRLS NSLSNNADCD SGISSSRPNM GHLSPESNPL SLSSVIDESH PGESWLLGLM  720
EGEYSDLSIE EKLNALLALI DLVRAGSSIR MEDPSAVLAE CVPRIYQHGS GGKIKRSTVK  780
RPSLLTSSFG DVTDSRRLSS DNCAVDSSVV LSTVCKEDRY SSMKKGLNGV GNGDALHPIQ  840
TIFLGSDRRY NRYWLFLGPC DADDPGHKQI YVESSEDGQW QVIDSEEALY GLLASLNGQG  900
RREAALLASL EKRMTFLAEE MMSRVPADFN VSQSTQSGLS EIDRTNEDSL SPISEIDNHS  960
LGETSFNAVT SSGAAPFIFE KTVEEEKKKY ERLQAYDSWI WNNFYSNLHA VRRGKRSFFD  1020
SWTRCGSCND LYWRDERHCK ACHTTFELDF DLEEKYAIHV AKCHAREDAD ICPMHKVLPS  1080
KLQALKAAIH VIEMFMPEGA LIGAWKKSAY KLWVRRLRRT SSLHELLQVL GDFVGSLNVD  1140
WVLQCNAIHK CESTVEDFVT HFQNMPQTSS AVALWLVKLD AFIALQLDER VVGTA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	ERRRRD
2	80	109	RRRRDNPDAGRNIGVNRSVQSTAKGKSKMK
3	80	112	RRRRDNPDAGRNIGVNRSVQSTAKGKSKMKKKK
4	187	192	RALKRR
5	190	219	RRRRDNPDAGRNIGVNRSVQSTAKGKSKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-155	HB-other family protein