PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037140-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 412aa MW: 44668.5 Da PI: 5.063

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037140-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ AUR62037140-RA 4 ICDYCGEQRSMVYCRSDAAFLCLSCDRNVHSAnalskrHSR 44 7*****************************65667777765 PP
2	zf-B_box	23.8	9.5e-08	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C++++ +++ C d + lC++C++ +H g H+ AUR62037140-RA 46 LVCERCNVQPAYVRCIDEGASLCQNCFMVGHDGsttsslHK 86 68*****************************7766666666 PP
3	CCT	61.7	2.3e-21	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrFvk+ AUR62037140-RA 355 RTEAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFVKAG 398 89***************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGYICDYCGE QRSMVYCRSD AAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPAYVRC 60 IDEGASLCQN CFMVGHDGST TSSLHKQQSI SYYSGCPSAA ELSKIWSFIL NPLPSSDNST 120 CPEGIGLLSI SESGANNNVD PVGEDDGQDA MDVVAGNDLQ NINKSSVWYG PASITELVSR 180 ECPDQHGCAE SSKLFNPTNR VPRFCEDDPL ADLDLDEVDL NFENYDELFG VTLTHSERLL 240 ENGGINSLFR RQGMSTTDSE GQGGFSVEGA SAGNTGQVQP ACSNAASADS LMSVKTEPNP 300 GIAAKQAHSN LSFSGITRES SGGDYQDCGA SSMLLLGEPP WCPPCPDSSI QSASRTEAVM 360 RYKEKKKARK FEKRVRYASR KARADVRKRV KGRFVKAGDA YDYDPLSTRS Y*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGYICDYCGE QRSMVYCRSD AAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPAYVRC  60
IDEGASLCQN CFMVGHDGST TSSLHKQQSI SYYSGCPSAA ELSKIWSFIL NPLPSSDNST  120
CPEGIGLLSI SESGANNNVD PVGEDDGQDA MDVVAGNDLQ NINKSSVWYG PASITELVSR  180
ECPDQHGCAE SSKLFNPTNR VPRFCEDDPL ADLDLDEVDL NFENYDELFG VTLTHSERLL  240
ENGGINSLFR RQGMSTTDSE GQGGFSVEGA SAGNTGQVQP ACSNAASADS LMSVKTEPNP  300
GIAAKQAHSN LSFSGITRES SGGDYQDCGA SSMLLLGEPP WCPPCPDSSI QSASRTEAVM  360
RYKEKKKARK FEKRVRYASR KARADVRKRV KGRFVKAGDA YDYDPLSTRS Y*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-105	CO-like family protein