PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62036460-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NF-YB

Protein Properties

Length: 464aa MW: 49799 Da PI: 5.2269

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62036460-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	108.3	4.6e-34	45	137	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +++++Pi+nv+r+m+++lPa aki++daket+qec+s+fi+ +++ea++ +e rk +++dd++ a+++ Gfe y++ l++yl +yre+eg+ AUR62036460-RA 45 DQHHIPISNVIRVMRQILPASAKITDDAKETIQECISKFIAHISEEANKIRTEELRKVVTADDIVAAMSKKGFEYYADVLSTYLYRYREAEGK 137 34579*****************************************9999************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MFSTTAGSKG NNPLPPPPPR SRSGRPPRHP SSSTNEVAPR RRERDQHHIP ISNVIRVMRQ 60 ILPASAKITD DAKETIQECI SKFIAHISEE ANKIRTEELR KVVTADDIVA AMSKKGFEYY 120 ADVLSTYLYR YREAEGKDDF TRVLRMRLSR PIVVGPDAGK VPPPVMADPY FYPHHGVSXX 180 XXXXXHGQYV NQGYAPGTGG GHDGYGMAVI GGGDEFVNHV YGNTIDSTMM NFDAGSSSYG 240 STVNSTMMNF DAGSSSYGST VNSTMMNFHV GSSCNNIGGG CNEYDGHWYG ETGIGGGHSE 300 YAGQGYDSTI NPMMNPNFVG SYNNNDFGGG RGIYDDHRYG VSNIGGNADH GYGMVVISGG 360 HGESVNQRYG DGVAGIGGAS GQYADRGYGV DIGGGGGVGE IVDQGYASTI NNTMMNDFSV 420 LESSSYNYID NNVLLEYNDV FDGLLAPNST QNVESIDVLQ VMK*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MFSTTAGSKG NNPLPPPPPR SRSGRPPRHP SSSTNEVAPR RRERDQHHIP ISNVIRVMRQ  60
ILPASAKITD DAKETIQECI SKFIAHISEE ANKIRTEELR KVVTADDIVA AMSKKGFEYY  120
ADVLSTYLYR YREAEGKDDF TRVLRMRLSR PIVVGPDAGK VPPPVMADPY FYPHHGVSXX  180
XXXXXHGQYV NQGYAPGTGG GHDGYGMAVI GGGDEFVNHV YGNTIDSTMM NFDAGSSSYG  240
STVNSTMMNF DAGSSSYGST VNSTMMNFHV GSSCNNIGGG CNEYDGHWYG ETGIGGGHSE  300
YAGQGYDSTI NPMMNPNFVG SYNNNDFGGG RGIYDDHRYG VSNIGGNADH GYGMVVISGG  360
HGESVNQRYG DGVAGIGGAS GQYADRGYGV DIGGGGGVGE IVDQGYASTI NNTMMNDFSV  420
LESSSYNYID NNVLLEYNDV FDGLLAPNST QNVESIDVLQ VMK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	1e-31	NF-YB family protein