PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035406-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Nin-like

Protein Properties

Length: 694aa MW: 78599.2 Da PI: 7.1161

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035406-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	34.8	3.2e-11	619	659	4	44
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 ++s+edl+ y +++i+dAA++Lg++ ++LKr+C + Ik W AUR62035406-RA 619 NLSMEDLEPYLKGTINDAANDLGISKSTLKRKCKGLKIKNW 659 89************************************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MLLTQELMLE PVPDGIFTSY PSSDTQFPSW MMVDVFSNNN SAVENDEALG TLGRVDEPTP 60 TVSLPEELVL PFSPVCNFID QVNDDGSGNG FSDSSAGMTA RVPAASSTRE SPSLGVRQRL 120 FCPRLFRNST SLCVVAISPP AATWLFVDML LRLLPYMSLS LLQPAARVVK LLAEQNLEKT 180 LLDFKPQLKT NQIVAAQLWF PTQIVKTNVL RSSQHNIPGS WTDDKRFMLD VTEGYLCESL 240 TRVYSCDRET KTSSSFSIID TLIPYLSTTK EVTYLLNRQV SVSAFQLRRP QWAPNLHVYK 300 SHHRNGPKPS ITMENYFICG TLAIPVFYPY TNQCVGVYEL VIASTEIDLV VVDIICNHLK 360 FHYQPRQRLL AEILKVMTKV CKDHDLPLAQ TWMPCTCPGR SCNSQQLCMS NAELPFYMID 420 SSYYPFWRAG AMYHMSEGQA VAGTTFSSKG LCFCRDITRF PDNFALVPLS RKFKINCSLA 480 ICLGSAYASN DVYIVQFFWQ RTLKNTIEDD DRKVMDITAS MKQQFDKLNL VSPTYEEFEA 540 ETERVSYRTK LINGEGNRDD FTFLPSTMTG KENTKVDMIQ PEEIPSNIFI DQEHNSINLG 600 IIEVVECKVT KQARKKRFNL SMEDLEPYLK GTINDAANDL GISKSTLKRK CKGLKIKNWQ 660 DERRKKGIGV PARRKRATKR NLLQEMELVE DDI*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MLLTQELMLE PVPDGIFTSY PSSDTQFPSW MMVDVFSNNN SAVENDEALG TLGRVDEPTP  60
TVSLPEELVL PFSPVCNFID QVNDDGSGNG FSDSSAGMTA RVPAASSTRE SPSLGVRQRL  120
FCPRLFRNST SLCVVAISPP AATWLFVDML LRLLPYMSLS LLQPAARVVK LLAEQNLEKT  180
LLDFKPQLKT NQIVAAQLWF PTQIVKTNVL RSSQHNIPGS WTDDKRFMLD VTEGYLCESL  240
TRVYSCDRET KTSSSFSIID TLIPYLSTTK EVTYLLNRQV SVSAFQLRRP QWAPNLHVYK  300
SHHRNGPKPS ITMENYFICG TLAIPVFYPY TNQCVGVYEL VIASTEIDLV VVDIICNHLK  360
FHYQPRQRLL AEILKVMTKV CKDHDLPLAQ TWMPCTCPGR SCNSQQLCMS NAELPFYMID  420
SSYYPFWRAG AMYHMSEGQA VAGTTFSSKG LCFCRDITRF PDNFALVPLS RKFKINCSLA  480
ICLGSAYASN DVYIVQFFWQ RTLKNTIEDD DRKVMDITAS MKQQFDKLNL VSPTYEEFEA  540
ETERVSYRTK LINGEGNRDD FTFLPSTMTG KENTKVDMIQ PEEIPSNIFI DQEHNSINLG  600
IIEVVECKVT KQARKKRFNL SMEDLEPYLK GTINDAANDL GISKSTLKRK CKGLKIKNWQ  660
DERRKKGIGV PARRKRATKR NLLQEMELVE DDI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	648	666	KRKCKGLKIKNWQDERRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-53	Nin-like family protein