PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035405-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Nin-like

Protein Properties

Length: 609aa MW: 69095.7 Da PI: 6.1584

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035405-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	31.3	3.9e-10	541	582	3	44
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +++ edl y ++++ +AA +Lg++ ++LKr+C +++Ik W AUR62035405-RA 541 CNLTKEDLLPYLKGTLDAAADHLGISESTLKRKCKELNIKNW 582 689*************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MLTQKLVPEP VPDGIFTSFV SSDPQFPSWV IIDYFSSNNT VENDEPLGTF SRVDEPRPTV 60 LLPEELVPPF SPVSNFIDQV NDDGSGNVKL FTEQNLEKSL LDFHPQLKTN QIVAVQLWLV 120 TKIVKKNVLR SSPRNIPGSW TEDQQFMLDV TEGYLCESLT RVYSCDQKTK SSSSFGLIDT 180 LIPYLSTTEE VTYLLNRQVS VSAFRLRCPL WAPNLHIYKH HHQNCPKPSS SKENYIICGT 240 LAIPVFDPYT NQCVGVYEVV IASTEIDLAV VDIICNLLKA VNLRANTQFH YQPRQRVLAE 300 ILKVITKVCE DHDLPLAQTW MPCTCPDRSC NSKQLCMSNA ELPFYMKDPS YYPFWEAGAM 360 YHMTEGQAVA GTTFSSKGLC FCRDITRFPD NFSLVPLSRQ FKINCSLAIC LGSAYATNDV 420 YIVQFFWQRT LKNTIEDDDF KVFSITTSMK QQFDKLSMVS PVYEELEAET ERVSYRTKLI 480 DGEGDGEDYT FLSSTIMARD EHNNEVGIRS NKQIDHEYQS INRGIEGVKC EVSKKARKKK 540 CNLTKEDLLP YLKGTLDAAA DHLGISESTL KRKCKELNIK NWQDERKNQG ISAPARKKRA 600 SKVVDTSY*

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MLTQKLVPEP VPDGIFTSFV SSDPQFPSWV IIDYFSSNNT VENDEPLGTF SRVDEPRPTV  60
LLPEELVPPF SPVSNFIDQV NDDGSGNVKL FTEQNLEKSL LDFHPQLKTN QIVAVQLWLV  120
TKIVKKNVLR SSPRNIPGSW TEDQQFMLDV TEGYLCESLT RVYSCDQKTK SSSSFGLIDT  180
LIPYLSTTEE VTYLLNRQVS VSAFRLRCPL WAPNLHIYKH HHQNCPKPSS SKENYIICGT  240
LAIPVFDPYT NQCVGVYEVV IASTEIDLAV VDIICNLLKA VNLRANTQFH YQPRQRVLAE  300
ILKVITKVCE DHDLPLAQTW MPCTCPDRSC NSKQLCMSNA ELPFYMKDPS YYPFWEAGAM  360
YHMTEGQAVA GTTFSSKGLC FCRDITRFPD NFSLVPLSRQ FKINCSLAIC LGSAYATNDV  420
YIVQFFWQRT LKNTIEDDDF KVFSITTSMK QQFDKLSMVS PVYEELEAET ERVSYRTKLI  480
DGEGDGEDYT FLSSTIMARD EHNNEVGIRS NKQIDHEYQS INRGIEGVKC EVSKKARKKK  540
CNLTKEDLLP YLKGTLDAAA DHLGISESTL KRKCKELNIK NWQDERKNQG ISAPARKKRA  600
SKVVDTSY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-59	Nin-like family protein