PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035227-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GATA

Protein Properties

Length: 500aa MW: 56361.1 Da PI: 8.0839

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035227-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.8	2.2e-16	225	258	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C+tt+Tp+WR +p+g ktLCnaCG+ y++ + AUR62035227-RA 225 CMHCKTTDTPQWRTEPRGRKTLCNACGVQYKHGR 258 99*****************************976 PP
2	GATA	46.1	6.9e-15	418	451	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +++Tp+WR+gp g tLCnaCG+ yr + AUR62035227-RA 418 CLHCESKDTPQWREGPMGRHTLCNACGVQYRAGR 451 99*****************************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MAASENKGVA ISGNEKNGVD PIPNTHVSFG QLLDLGVINQ FGQLLGDYSR LDEELWLCDL 60 ENDKSMDALD SGYEGLKCQI IPSDETIIDV KQPLEYVDNA VCEGGMAPVK ETSTSLNNSS 120 QKNSQTSSPI SVFQTERSYT DVISAMRAQS QCHQPTKNNF PGGRQFFGTT IYTREQNSAC 180 QSESEYSMES SLSDETEEYI PSKQVRTRKI SDILDSDSDP AVKKCMHCKT TDTPQWRTEP 240 RGRKTLCNAC GVQYKHGRLY PDYRPLKSPG FDPSIHFNLP KKVQEMRMGS SSEQGPNPTP 300 KSNKIEERRM VYTIEKGPNL TPKPKEGEEI RMSHTSGRDP ITPKTKSQRP SFESDSDEEW 360 ILGNNERDQN RAHRAKKFEK LREKVSNEIQ SDSRERSQNS DSYLSLKRKL PKHAGKKCLH 420 CESKDTPQWR EGPMGRHTLC NACGVQYRAG RLFPEYRPLK SPTYDPSLHS HLPKQVLKLR 480 MRMNSAEKCA TSGTHEKPP*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MAASENKGVA ISGNEKNGVD PIPNTHVSFG QLLDLGVINQ FGQLLGDYSR LDEELWLCDL  60
ENDKSMDALD SGYEGLKCQI IPSDETIIDV KQPLEYVDNA VCEGGMAPVK ETSTSLNNSS  120
QKNSQTSSPI SVFQTERSYT DVISAMRAQS QCHQPTKNNF PGGRQFFGTT IYTREQNSAC  180
QSESEYSMES SLSDETEEYI PSKQVRTRKI SDILDSDSDP AVKKCMHCKT TDTPQWRTEP  240
RGRKTLCNAC GVQYKHGRLY PDYRPLKSPG FDPSIHFNLP KKVQEMRMGS SSEQGPNPTP  300
KSNKIEERRM VYTIEKGPNL TPKPKEGEEI RMSHTSGRDP ITPKTKSQRP SFESDSDEEW  360
ILGNNERDQN RAHRAKKFEK LREKVSNEIQ SDSRERSQNS DSYLSLKRKL PKHAGKKCLH  420
CESKDTPQWR EGPMGRHTLC NACGVQYRAG RLFPEYRPLK SPTYDPSLHS HLPKQVLKLR  480
MRMNSAEKCA TSGTHEKPP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	6e-26	GATA family protein