PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62035217-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family CO-like
Protein Properties Length: 306aa    MW: 33118.4 Da    PI: 5.6944
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62035217-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07941436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++ fC+ +  +lC +C  + H  
  AUR62035217-RA  9 KLCDSCKSASATVFCRADTAYLCISCDAKVHAA 41
                    68*************************999954 PP
2zf-B_box27.37.5e-095196342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +  ++C++C   +H+       H++vpl
  AUR62035217-RA 51 VWVCEVCEHAPATVTCKADAAHICATCDRDIHSAnplarrHDRVPL 96
                    689*****************************66899999999986 PP
3CCT70.63.9e-24235278144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  AUR62035217-RA 235 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 278
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGGGLMAAKL CDSCKSASAT VFCRADTAYL CISCDAKVHA ANKLASRHAR VWVCEVCEHA  60
PATVTCKADA AHICATCDRD IHSANPLARR HDRVPLSPFY DPLSPPPPGE QNSSSXXXXX  120
XXKSAAINKL FGDDYYSDAD EAEAASWLLP NPNKQDEPKS IDYLFSGAAD EADAIDPYLD  180
LDFGAEPKPD PDLSADGVSS SSLDYGVVPD AGAMADVAST GFDKQQQMKM IGMDREARVL  240
RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDV EAEVSAASVD GLFATDPGYG  300
VVPSF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.17e-82CO-like family protein