PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033943-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 861aa MW: 91620.5 Da PI: 8.9524

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033943-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	496	516	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ + t +C++Gd+C+F+H AUR62033943-RA 496 PCNSYVSTNFCSRGDSCSFSH 516 799999*************** PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MDNSNPGVPS NDPIKELFGP PPPRRPIPSK SFDALVKIFS LFSDQNPFSE CASNAKLPEF 60 PRQCRDNLID SRRLASGCVL CVDCANHTLH LSDVEHVVVP RVEKEASNTL AGSDTVEAHI 120 LSVHDHEANN ERVPGEGCKD IGFSGSKLIN ELGRTNKSKT MEKLPSAEEG TSTGMAEVDK 180 VHEELSDVFI NNSVIAESSN SAKVTVDGNM KGYGAEEKKQ KHVEVSTSTS GGDEAKSHTH 240 LSVVREISDC REVGIQHVGM CPGEAQMPQG KQRKAPQGLS ESENPTFAAP KSNNTGGTIS 300 NSIMMRNKSS AVTKGKIKKV KKTSAKDVNS GKSKILSIDS GTSYNMSSGG VDPVVCEKMV 360 KQSVYGNTGK STARKVGNNW PKSCAKIHYS RQELLNIWKM TSVPEDILKI VREIDAEVHS 420 KYQDSAAGKK TDAGSAKKKN PGPPTENKMA EEEGEKCKFS HDVIPLTKSQ PCCHFARQAC 480 MKGDDCPFDH QLSNYPCNSY VSTNFCSRGD SCSFSHKIPT KKVAETAAGV SHFGSTIRDQ 540 LDKSDSKQQL DANASFSSGV ATPKNLKENI ATQASLPGKA PKGLSFLSSG KSSLKDSGKL 600 KEIDLSQKSG SATGTSSRPN IATTAVNVVK DLIDTPASDT PQGKGFISFV RHSAGSSGDK 660 KQANPSQHRD NSRFYSFGKS ENVNSSHKSD DPSATSDQLN KEMSSKVLSV CGMPEANPVP 720 MSPKQISVPS SGGFPNCAGK SQATLPNNGH LGSQMRESES AKGSEKAVQP KLWGSPASSG 780 QSPIMIGVKN TPGTAQRALL STLSFAAKYG SGIKMTSASS AKEVTKNERA SSGSGCTQDE 840 PSKASAILDF LYSGSNKKKQ *

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MDNSNPGVPS NDPIKELFGP PPPRRPIPSK SFDALVKIFS LFSDQNPFSE CASNAKLPEF  60
PRQCRDNLID SRRLASGCVL CVDCANHTLH LSDVEHVVVP RVEKEASNTL AGSDTVEAHI  120
LSVHDHEANN ERVPGEGCKD IGFSGSKLIN ELGRTNKSKT MEKLPSAEEG TSTGMAEVDK  180
VHEELSDVFI NNSVIAESSN SAKVTVDGNM KGYGAEEKKQ KHVEVSTSTS GGDEAKSHTH  240
LSVVREISDC REVGIQHVGM CPGEAQMPQG KQRKAPQGLS ESENPTFAAP KSNNTGGTIS  300
NSIMMRNKSS AVTKGKIKKV KKTSAKDVNS GKSKILSIDS GTSYNMSSGG VDPVVCEKMV  360
KQSVYGNTGK STARKVGNNW PKSCAKIHYS RQELLNIWKM TSVPEDILKI VREIDAEVHS  420
KYQDSAAGKK TDAGSAKKKN PGPPTENKMA EEEGEKCKFS HDVIPLTKSQ PCCHFARQAC  480
MKGDDCPFDH QLSNYPCNSY VSTNFCSRGD SCSFSHKIPT KKVAETAAGV SHFGSTIRDQ  540
LDKSDSKQQL DANASFSSGV ATPKNLKENI ATQASLPGKA PKGLSFLSSG KSSLKDSGKL  600
KEIDLSQKSG SATGTSSRPN IATTAVNVVK DLIDTPASDT PQGKGFISFV RHSAGSSGDK  660
KQANPSQHRD NSRFYSFGKS ENVNSSHKSD DPSATSDQLN KEMSSKVLSV CGMPEANPVP  720
MSPKQISVPS SGGFPNCAGK SQATLPNNGH LGSQMRESES AKGSEKAVQP KLWGSPASSG  780
QSPIMIGVKN TPGTAQRALL STLSFAAKYG SGIKMTSASS AKEVTKNERA SSGSGCTQDE  840
PSKASAILDF LYSGSNKKKQ *