PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033894-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GRF

Protein Properties

Length: 533aa MW: 57331.7 Da PI: 9.1215

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033894-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	1e-24	167	210	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e AUR62033894-RA 167 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHMNRGRHRSRKPVE 210 79***************************************998 PP
2	QLQ	60.6	4.3e-21	98	133	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+ +L++Q+l+yKy++an+P+Pp+Ll +i++ AUR62033894-RA 98 PFTPSQWFELEQQALIYKYIIANVPIPPNLLIPIRR 133 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MEFGLMGNML IGSTEFSNKE MPSSRISDDN WKPTKIAKLS NAFSDWQQEQ NLLSFSSPKS 60 STIPFFQHPN SFYSKNAGYT CNGSVNASMC LTNGVRAPFT PSQWFELEQQ ALIYKYIIAN 120 VPIPPNLLIP IRRAFESAGF SSFSSGLLSP STFGWGPFHL GFANSADPEP GRCRRTDGKK 180 WRCSRDAVPD QKYCERHMNR GRHRSRKPVE GHPGRSISGV TTNKTSSSTT NVMNSASSSS 240 ALVVPGGGTS NSFAINLDQS KDIQPVPPNH LPSSLVNRHI VNIANSSQGM QGDTGLDFQY 300 PKISLNSNGN KFSVTESTAG NFAFLTSDAI LNTTHTDSSV SRSYGPTHDL NAQRSNPQHS 360 NHSMDDQSSI LWSKLQTQTD RTTQLSISIP PADFMSSTSS PTGENVALSP LRLSREFDTV 420 QMGLGVNTVT NDRRPSSWET SLGGPLGEVL KTTTNISSGI QSKSILPLNL LSKGWDGKPQ 480 PASSPTGVLG YFSNSSAGSS PKAESGKALE TSTLSGDLIG FTLGSSSSLP IF*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MEFGLMGNML IGSTEFSNKE MPSSRISDDN WKPTKIAKLS NAFSDWQQEQ NLLSFSSPKS  60
STIPFFQHPN SFYSKNAGYT CNGSVNASMC LTNGVRAPFT PSQWFELEQQ ALIYKYIIAN  120
VPIPPNLLIP IRRAFESAGF SSFSSGLLSP STFGWGPFHL GFANSADPEP GRCRRTDGKK  180
WRCSRDAVPD QKYCERHMNR GRHRSRKPVE GHPGRSISGV TTNKTSSSTT NVMNSASSSS  240
ALVVPGGGTS NSFAINLDQS KDIQPVPPNH LPSSLVNRHI VNIANSSQGM QGDTGLDFQY  300
PKISLNSNGN KFSVTESTAG NFAFLTSDAI LNTTHTDSSV SRSYGPTHDL NAQRSNPQHS  360
NHSMDDQSSI LWSKLQTQTD RTTQLSISIP PADFMSSTSS PTGENVALSP LRLSREFDTV  420
QMGLGVNTVT NDRRPSSWET SLGGPLGEVL KTTTNISSGI QSKSILPLNL LSKGWDGKPQ  480
PASSPTGVLG YFSNSSAGSS PKAESGKALE TSTLSGDLIG FTLGSSSSLP IF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-67	GRF family protein