PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62033468-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 276aa    MW: 30933.6 Da    PI: 7.0762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62033468-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.4e-1080105127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  f+  G+C+ G++C+FaHg+
  AUR62033468-RA  80 FKTRLCAKFRM-GQCRNGENCNFAHGE 105
                     69*********.*************96 PP
2zf-CCCH29.51.2e-09143166225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k++lC+ f+ + +C+yGdrC+F H
  AUR62033468-RA 143 KMKLCKKFYNGEECPYGDRCNFLH 166
                     789*******66************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MSFSDSFSSF VPFSNGLDSM GFWPQFNGSN EQPEVNSEFD HDLPPLKRSK NSSDNLPSNL  60
THRTPQMNPP VNQPTGKIFF KTRLCAKFRM GQCRNGENCN FAHGEDDLRK PPPNWQELVG  120
GRTEDRGNGG SDNWEDDDRI IHKMKLCKKF YNGEECPYGD RCNFLHKEPA KFREPAPVRF  180
RENSRESSAI SIELLLPGGR PADAEPVTMN SAPLKPVSAP LNDPTPTKID LGTPSGHEGQ  240
GKKCIFKWKG TKKINRIYGD WIDDLPLNLP NQVEG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-45C3H family protein