PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62033209-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 321aa MW: 34325.3 Da PI: 8.4393

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62033209-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	89	108	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r AUR62033209-RA 89 PCTECGKTFWSWKALFGHMR 108 5******************8 PP
2	zf-C2H2	14.6	9.4e-05	236	258	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C k+F++ L H+r+H AUR62033209-RA 236 HKCGVCLKVFPTGQALGGHMRSH 258 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDNTPPPPPP PLPLPPPTPI PIPLSLSPPT PTSYVHNHKD LLLPFPPPTT PISSSPTASL 60 RKKRHSKLLR IDTSTSTTPA NKKPEITPPC TECGKTFWSW KALFGHMRCH PEREWRGINP 120 PPHLRRRSLP PTPTTTTDDH EVAASLLLLA AGPVSPDVAL ASPPRFECSS CKKTFGSHQA 180 LGGHRASHKN VKGCFAITKS ATDVEDDQCM IMQSGSSHEE AIGLGLSLGL GLGVGHKCGV 240 CLKVFPTGQA LGGHMRSHWE KSEEPALRSL FGLPLGSDSR PNKAQCGVDL NLPPQLLEDG 300 SSSTTIDSSN NMQLELKLGI *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-62	C2H2 family protein