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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62031401-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | GRAS | ||||||||
Protein Properties | Length: 455aa MW: 49222.6 Da PI: 7.7175 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 344.8 | 1.4e-105 | 79 | 454 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++l+ e+A a+++g++e a+ lLarls +++++g++ qRla+y+ +AL+ r +e+++ ++ s+e++ a+ ++++sP++kf+ l AUR62031401-RA 79 KQLIAEAAMAIAEGKNEPATDLLARLSRISNSKGSSEQRLAFYMGNALRCRACP--NEISAPVHELY-----SEEQMLAMYSLYDISPCFKFGLL 166 68899************************************************9..56654333332.....6688889999************* PP GRAS 97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 +aN +lea+ ++ +vH+iDfd+++G+Q+++Ll+aLa+R+ +g+ +l++T+v+ e +++ e+++e L k+Ae++g++++f+ AUR62031401-RA 167 AANLVMLEAITSAlqegIKVHVIDFDVGHGAQYINLLRALAERRsqivsarAGSYELKVTVVET-EVNNRGVKESVREGLIKLAERVGINLKFQG 260 ***98888888776656899*********************99967776666699*********.5568888899******************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 +++r+++l+ e+L ++ gEa++Vn++++lhr++desvs+e+ rde+L+ vk+l+P+ v++veqe++ n+++F++r+ e++ yy al+dsle++l AUR62031401-RA 261 -LSRRITELTRESLGCEDGEAIVVNFAFKLHRVPDESVSMENLRDELLRRVKGLNPRAVTLVEQEMNGNTAPFMTRVNESCAYYGALLDSLESTL 354 .59******************************************************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLv 368 p+e+++r+ vE+ lgr+ +n vaceg+er+er e ++kWr+r+++aGF+ pls+++a+++++ l+ + g++v+ee+g + +gW++r+L+ AUR62031401-RA 355 PKENSDRARVEEG-LGRKMSNSVACEGRERVERAEVFGKWRARMGMAGFELKPLSQSVAESMRAKLNSARggNPGFTVKEENGGVGFGWMGRTLT 448 *************.****************************************************998877899******************** PP GRAS 369 svSaWr 374 ++SaWr AUR62031401-RA 449 VASAWR 454 *****8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
MSPSGNPNPS PSPSPSPNTN HASSSTSGSS NTNNTNTIAS NNNNMISPSP TSSTSSCCST 60 SAPSLPPQQQ PPPETLSAKQ LIAEAAMAIA EGKNEPATDL LARLSRISNS KGSSEQRLAF 120 YMGNALRCRA CPNEISAPVH ELYSEEQMLA MYSLYDISPC FKFGLLAANL VMLEAITSAL 180 QEGIKVHVID FDVGHGAQYI NLLRALAERR SQIVSARAGS YELKVTVVET EVNNRGVKES 240 VREGLIKLAE RVGINLKFQG LSRRITELTR ESLGCEDGEA IVVNFAFKLH RVPDESVSME 300 NLRDELLRRV KGLNPRAVTL VEQEMNGNTA PFMTRVNESC AYYGALLDSL ESTLPKENSD 360 RARVEEGLGR KMSNSVACEG RERVERAEVF GKWRARMGMA GFELKPLSQS VAESMRAKLN 420 SARGGNPGFT VKEENGGVGF GWMGRTLTVA SAWR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-138 | GRAS family protein |