PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030805-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 468aa MW: 52801 Da PI: 4.8063

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030805-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.7	5.8e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + ++++fC ++ +lC+ C ++ H+ H++v AUR62030805-RA 17 ARACESCLKRRARWFCAADDAFLCQACDSSVHSAnelasrHNRV 60 578*****************************667888888876 PP
2	CCT	67.6	3.3e-23	404	447	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ AUR62030805-RA 404 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRT 447 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MITHSKKTAN AVGGKTARAC ESCLKRRARW FCAADDAFLC QACDSSVHSA NELASRHNRV 60 RLESKINIQS SKLMNTQPSA SPSWHQGFTK KARTPRSNSN AKANKPSYNN YEMRVVPEVS 120 NEDDDQGSIE GNEEDRNEAV FSVPNLEVND PFEIKEFKNS NNNKVSVVEG GFEDDFNISL 180 IGFEGDNNEW ENYLPAGFLA SDNELAEFAA DVESLLEHEA AEEGGRGNEE ADDELQLLYP 240 GVKIEEEGDI SATTDHCYFD WSIDVESEMF NFDLNQTYGN NSNHDQSQVS GVEEDEEEDG 300 KKMVVPKHEA AEMEEEELEG GKDMEANNKR RKILLRLNYD EVINAWASQG CLSPWTTGRR 360 PEFEFDHHGW PYCMGGMFPT GVPHPQGEGW MGMRGNANGG DEGREARVSR YREKRRTRLF 420 SKKIRYEVRK LNAEKRPRLK GRFVKRTSLS QVVGVGVEPT FPNYHNK*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MITHSKKTAN AVGGKTARAC ESCLKRRARW FCAADDAFLC QACDSSVHSA NELASRHNRV  60
RLESKINIQS SKLMNTQPSA SPSWHQGFTK KARTPRSNSN AKANKPSYNN YEMRVVPEVS  120
NEDDDQGSIE GNEEDRNEAV FSVPNLEVND PFEIKEFKNS NNNKVSVVEG GFEDDFNISL  180
IGFEGDNNEW ENYLPAGFLA SDNELAEFAA DVESLLEHEA AEEGGRGNEE ADDELQLLYP  240
GVKIEEEGDI SATTDHCYFD WSIDVESEMF NFDLNQTYGN NSNHDQSQVS GVEEDEEEDG  300
KKMVVPKHEA AEMEEEELEG GKDMEANNKR RKILLRLNYD EVINAWASQG CLSPWTTGRR  360
PEFEFDHHGW PYCMGGMFPT GVPHPQGEGW MGMRGNANGG DEGREARVSR YREKRRTRLF  420
SKKIRYEVRK LNAEKRPRLK GRFVKRTSLS QVVGVGVEPT FPNYHNK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	431	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	5e-43	CO-like family protein