PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030149-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family TCP
Protein Properties Length: 405aa    MW: 43310.1 Da    PI: 8.8697
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030149-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.51.1e-381072572130
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssas........ns 85 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++   s++++   ++ + s + +        + 
  AUR62030149-RA 107 SGGKDRHSKVLTAKGPRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAINELPSLntsSFPPE---TPRQLSDERKpvlngvdsA- 197
                     689*************************************************************54422222...2222222222222233330. PP

             TCP  86 ssg..............kaaksaa.kskksqksaasalnlak.esrakararare.rtrekm 130
                       +              + ++++  +s++s++s+ s l+l + e r kar+rare rt++++
  AUR62030149-RA 198 --DveldgdpgygqnqqQMSTKSGcCSNNSETSKGSGLSLCRsENRVKARERARErRTAKDK 257
                     ..14444445555555455555556999999999999999999************5555443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MEVDEIQSSQ QACKYSRVNS NGRIDTSKIG GGGSGGHDNA GRGEDEIEET DLRRAIVPTT  60
TTSTNPAAVT GNGSSGGVGG DMQVGSSNRF GRQWQPSSRI IRVSRASGGK DRHSKVLTAK  120
GPRDRRVRLS VTTAIQFYDL QDRLGYDQPS KAVEWLIKAA ADAINELPSL NTSSFPPETP  180
RQLSDERKPV LNGVDSADVE LDGDPGYGQN QQQMSTKSGC CSNNSETSKG SGLSLCRSEN  240
RVKARERARE RRTAKDKERD GEPTRVSVAS HQHNQHHQNV SSMPQTSSFT QLLTAGMSNL  300
NESNNGAAAS SSPSPHHHVD SEVDLFHKHS RGGNNNNQWL SSAAAASTTP MADYFGTGLI  360
GLSSTRAGQI QMGNNSSSVP QPPGLQLYYS DGNRQSDQKG KGKN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.17e-49TCP family protein