PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030115-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 449aa MW: 52599.9 Da PI: 7.1423

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030115-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.6	3.4e-07	10	52	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++++ r+ + tr +Cka+++ k +k+g++ev + +HnHel+ AUR62030115-RA 10 KTRKPRQVSITRSNCKACIREKVNKEGQFEVVAHVIQHNHELT 52 4677788899*******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MVDEEDVNVK TRKPRQVSIT RSNCKACIRE KVNKEGQFEV VAHVIQHNHE LTKPQWHYLH 60 RSERKMTEEK VVTMKSSGLT TMDTYNYMAT EAGGEQNIGH SVVDHLNFCS RLRMEQIEAG 120 DAQTLVNILS QEQSEDPNFF FRVKFDKEGR ICNICWRDSM ILEDYRIYGD VLVFDTTYRT 180 NKYNLICAPF VGINNHWHNC MFACAFIGDE TTDSFVWLLQ TFFKAMEDRK PTSIFTDQDQ 240 AMVNSILEVI PNTRHRLCIW HLEKNAITRF GALKKDKEFK FAFNQWLKMC VTEQEFEAKW 300 QAMLQKYELT EHSWYKRVYE LKDKWCPALC RDFFSAGILS SQRSESTNHA IGFRASKATT 360 LTEFYTIFKK TTNRWRSTEK YDEFTCRKSI AFTSLPLSGM LKHAVQVFTL SLFRNFEEEF 420 GYSMATTVQM LGSNEECLLY QVTLEDKP*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MVDEEDVNVK TRKPRQVSIT RSNCKACIRE KVNKEGQFEV VAHVIQHNHE LTKPQWHYLH  60
RSERKMTEEK VVTMKSSGLT TMDTYNYMAT EAGGEQNIGH SVVDHLNFCS RLRMEQIEAG  120
DAQTLVNILS QEQSEDPNFF FRVKFDKEGR ICNICWRDSM ILEDYRIYGD VLVFDTTYRT  180
NKYNLICAPF VGINNHWHNC MFACAFIGDE TTDSFVWLLQ TFFKAMEDRK PTSIFTDQDQ  240
AMVNSILEVI PNTRHRLCIW HLEKNAITRF GALKKDKEFK FAFNQWLKMC VTEQEFEAKW  300
QAMLQKYELT EHSWYKRVYE LKDKWCPALC RDFFSAGILS SQRSESTNHA IGFRASKATT  360
LTEFYTIFKK TTNRWRSTEK YDEFTCRKSI AFTSLPLSGM LKHAVQVFTL SLFRNFEEEF  420
GYSMATTVQM LGSNEECLLY QVTLEDKP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-78	FAR1 family protein