PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62030095-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 493aa MW: 55287.5 Da PI: 9.4352

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62030095-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.1	7.7e-15	154	252	2	90
FAR1 2 fYneYAkevGFsvrkskskks......krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+e+GF+vr s++k++ + +g ++ + + Cskeg+ +++kk+ + ++++++r+gC ak+k + + gk++v+ + + H+ AUR62030095-RA 154 FYYKYANECGFKVRFSTTKSQknkndpTGKGVTIIKYLLCSKEGYVTNNKKSgkqvEGACLKRKTVKRVGCPAKIKFRFCTGGKYMVYCFYESHS 248 9**********9887766644445545677889999*****999996544444456999**************************** PP FAR1 87 Hela 90 H+++ AUR62030095-RA 249 HPFS 252 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MRVWIGKASP YVMHAVMIDS ASILLLRCIG CTLAQSSFPF CSTLRTPEAG SYGSSLGRAS 60 SCGSPHTPGI PYITPWWRPL HHFSRNMSES IEHCSSSVTT EDNNVRIFKT PTQPLLPKIY 120 YNSGGDKEYM PCCSSENKPF VGMIFDTLQD GIAFYYKYAN ECGFKVRFST TKSQKNKNDP 180 TGKGVTIIKY LLCSKEGYVT NNKKSGKQVE GACLKRKTVK RVGCPAKIKF RFCTGGKYMV 240 YCFYESHSHP FSTPITRQVT KHEVGLNFAH KSSLYGDGVE FFVIVDHEKR KNFDVNFDLA 300 TYESSCTCRM FESQGVLCRH ILFVMKGKCI REISNAYILN RRRKDVLKKA FAIDVALDDA 360 SKYDKKKQLV SDVWSKIFSC VSLTDQYEDD LSKLIRTLSP FEEQMISKNN PENALSSKEV 420 KDVDIQVLVG SNEVDVNVLP PNQCLNKGSA RSSKRLKSAK EIASEEKSKK GRTCRACGQS 480 GVSHDSRKCP NK*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MRVWIGKASP YVMHAVMIDS ASILLLRCIG CTLAQSSFPF CSTLRTPEAG SYGSSLGRAS  60
SCGSPHTPGI PYITPWWRPL HHFSRNMSES IEHCSSSVTT EDNNVRIFKT PTQPLLPKIY  120
YNSGGDKEYM PCCSSENKPF VGMIFDTLQD GIAFYYKYAN ECGFKVRFST TKSQKNKNDP  180
TGKGVTIIKY LLCSKEGYVT NNKKSGKQVE GACLKRKTVK RVGCPAKIKF RFCTGGKYMV  240
YCFYESHSHP FSTPITRQVT KHEVGLNFAH KSSLYGDGVE FFVIVDHEKR KNFDVNFDLA  300
TYESSCTCRM FESQGVLCRH ILFVMKGKCI REISNAYILN RRRKDVLKKA FAIDVALDDA  360
SKYDKKKQLV SDVWSKIFSC VSLTDQYEDD LSKLIRTLSP FEEQMISKNN PENALSSKEV  420
KDVDIQVLVG SNEVDVNVLP PNQCLNKGSA RSSKRLKSAK EIASEEKSKK GRTCRACGQS  480
GVSHDSRKCP NK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	367	RRRKDVLKKAFAIDVALDDASKYDKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-12	FAR1 family protein