PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62029405-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 257aa    MW: 29542.4 Da    PI: 8.029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62029405-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001395117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k ++++ +L  H +  H
  AUR62029405-RA  95 SCSVCHKAYPTQRLLSIHVSEvH 117
                     6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MAMEIEQGKS ESDFPYWKSI YRKFAPDSPF FSSGDIERQL LHKQAAIDLT EDEKKQLIDM  60
DDHEREIFCP IVGCGARLKS LEGFEDHYNA SHTASCSVCH KAYPTQRLLS IHVSEVHDSY  120
FKAKVARGYP MYECLVETCG LKFKSYKARH QHLVDKHKFP TTFEFYKKVH LSKKQRQKQW  180
RKQALCKEET SNGMPLDAEV DDTMEDLTSA ICQLSTSDSM PSSISFGRRH NRGLAFVPRS  240
VQREKRPDDS SSTTNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179KKQRQKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-104C2H2 family protein