PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029145-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 395aa MW: 43671 Da PI: 7.0483

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029145-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.3	3.3e-07	263	285	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H AUR62029145-RA 263 HYCQVCGKGFKRDANLRMHMRAH 285 68*******************99 PP
2	zf-C2H2	13.8	0.00017	316	340	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp C k Fs s+L++H + + AUR62029145-RA 316 YSCPqmGCRKQFSVLSDLRTHEKHC 340 99*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MITELPPCFP STSEPEGGIH HPSQQLYHDV MEASFGGGGG VGGSETQLRS LLCSLSILKQ 60 KLHEVESLVS LFLPEDSHHH HHQSQPVATL STSPVPYANI GTLIQEVVVT ASSMMFNCQQ 120 MTLGSTQTAG NNSNSNSISR DHMQTAEGQH QIKQQRPDDG LQQFVSCDVS KNNNMFVDGE 180 NIYNWYNDTS TAACNNYIST RTDSSRTTTT ASITTIITAV KGEKSKDVKA QTSSKLVRDR 240 KSLTEAYDLV EPEAADLLAK YTHYCQVCGK GFKRDANLRM HMRAHGDEYK STAALSNPLK 300 KEAEDQNSAI ITPRKYSCPQ MGCRKQFSVL SDLRTHEKHC GDRKWQCSCG TTFSRKDKLM 360 GHVALFVGHH PLVIPLVDNK LDNLGELQIH FEDR*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MITELPPCFP STSEPEGGIH HPSQQLYHDV MEASFGGGGG VGGSETQLRS LLCSLSILKQ  60
KLHEVESLVS LFLPEDSHHH HHQSQPVATL STSPVPYANI GTLIQEVVVT ASSMMFNCQQ  120
MTLGSTQTAG NNSNSNSISR DHMQTAEGQH QIKQQRPDDG LQQFVSCDVS KNNNMFVDGE  180
NIYNWYNDTS TAACNNYIST RTDSSRTTTT ASITTIITAV KGEKSKDVKA QTSSKLVRDR  240
KSLTEAYDLV EPEAADLLAK YTHYCQVCGK GFKRDANLRM HMRAHGDEYK STAALSNPLK  300
KEAEDQNSAI ITPRKYSCPQ MGCRKQFSVL SDLRTHEKHC GDRKWQCSCG TTFSRKDKLM  360
GHVALFVGHH PLVIPLVDNK LDNLGELQIH FEDR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-53	C2H2 family protein