PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029067-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 385aa MW: 44243.5 Da PI: 7.9603

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029067-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60	7.6e-19	48	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkkekdgk 75 Y+++A+ +GFsvrk +s+++ n i ++ fvCsk g r++ kk+ ++++ r +etrt+Cka ++ k++k+g+ AUR62029067-RA 48 LYKAHARALGFSVRKGTSRRRCSNSVIFEKYFVCSKAGLRNKGKKEvqtksivgipttegsasttsqKKRKLRVVNETRTDCKAYIRFKMDKEGR 142 7****************************************999*************98544444456789************** PP FAR1 76 wevtkleleHnHela 90 + v++ + HnH+++ AUR62029067-RA 143 FIVADHNIIHNHDFV 157 **********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MCFRFTQSSV SPFTETQQEE DYTYDNDLSI GECLLGREVL DLDDALNLYK AHARALGFSV 60 RKGTSRRRCS NSVIFEKYFV CSKAGLRNKG KKEVQTKSIV GIPTTEGSAS TTSQKKRKLR 120 VVNETRTDCK AYIRFKMDKE GRFIVADHNI IHNHDFVKQE ECHCLRSKLS TSKCVGKVIE 180 TMVTSGSKQM DCCKYLCIAD KEKELDGHTK TDYLNIVSRL KIKNSKGGDM QNVLDVMQRR 240 TTDDNSFFYR VKVNDDNQIV SIFWRDSMML EDYIAYGDAL IFDTTYRINR YNLICAPFFG 300 INNHWKTTMF ACAFIFDEKT EIFEWLLETF KNSMSGLAPK SIFTDQNLEL PNAIAKFEDI 360 SDAGSGFWIL KNIEDFVQLY RALQ*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MCFRFTQSSV SPFTETQQEE DYTYDNDLSI GECLLGREVL DLDDALNLYK AHARALGFSV  60
RKGTSRRRCS NSVIFEKYFV CSKAGLRNKG KKEVQTKSIV GIPTTEGSAS TTSQKKRKLR  120
VVNETRTDCK AYIRFKMDKE GRFIVADHNI IHNHDFVKQE ECHCLRSKLS TSKCVGKVIE  180
TMVTSGSKQM DCCKYLCIAD KEKELDGHTK TDYLNIVSRL KIKNSKGGDM QNVLDVMQRR  240
TTDDNSFFYR VKVNDDNQIV SIFWRDSMML EDYIAYGDAL IFDTTYRINR YNLICAPFFG  300
INNHWKTTMF ACAFIFDEKT EIFEWLLETF KNSMSGLAPK SIFTDQNLEL PNAIAKFEDI  360
SDAGSGFWIL KNIEDFVQLY RALQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-48	FAR1 family protein