PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028919-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 463aa MW: 50274 Da PI: 8.8852

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028919-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.7e-41	184	261	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+++ AUR62028919-RA 184 RCQVEGCNLDLSSAKDYHRKHRVCENHSKSPKVVINGLERRFCQQCSRFHGLSEFDQKKRSCRRRLSDHNARRRKPKP 261 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSAISMMELN AKSPFLWDWE NLVMFNTKAA ETPKKLQSDS EIEGIEGFEA GSFYSSGGRS 60 DGGTGSDLGY ASSSKSSKSA SVDSSADREL KGNQFSLEAT DCFQQDLRGK RDLVNSSGTT 120 RASPTIESSV ASGESLIALE LGKRTYFEDV SGASNVKNTA RSSIPPDSAA KKTKSSSPSI 180 ENPRCQVEGC NLDLSSAKDY HRKHRVCENH SKSPKVVING LERRFCQQCS RFHGLSEFDQ 240 KKRSCRRRLS DHNARRRKPK PEVIQFNSMR LTSSLYEGRN QLNFAFDQVP MHQTRHGTWD 300 SARESKVTLA KPGFFTTMKS GGTDQLHSTH SGLPSPTTKV SPVSTQLLPS KGVPSDVFQR 360 GLPVSVAPSN LAAAQDFRAL SLLSTSSWSS CDPEPPALNH SMHTNHASLA PSLPPMHPLP 420 LGGPPISSEF WQADQPASGG PGSHTSTFQL FKAPNESSFY LY*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSAISMMELN AKSPFLWDWE NLVMFNTKAA ETPKKLQSDS EIEGIEGFEA GSFYSSGGRS  60
DGGTGSDLGY ASSSKSSKSA SVDSSADREL KGNQFSLEAT DCFQQDLRGK RDLVNSSGTT  120
RASPTIESSV ASGESLIALE LGKRTYFEDV SGASNVKNTA RSSIPPDSAA KKTKSSSPSI  180
ENPRCQVEGC NLDLSSAKDY HRKHRVCENH SKSPKVVING LERRFCQQCS RFHGLSEFDQ  240
KKRSCRRRLS DHNARRRKPK PEVIQFNSMR LTSSLYEGRN QLNFAFDQVP MHQTRHGTWD  300
SARESKVTLA KPGFFTTMKS GGTDQLHSTH SGLPSPTTKV SPVSTQLLPS KGVPSDVFQR  360
GLPVSVAPSN LAAAQDFRAL SLLSTSSWSS CDPEPPALNH SMHTNHASLA PSLPPMHPLP  420
LGGPPISSEF WQADQPASGG PGSHTSTFQL FKAPNESSFY LY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	258	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-67	SBP family protein