PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62028581-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34603.1 Da    PI: 5.0655
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62028581-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.4e-20205252249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     +i+nks++ vtfskRr g++KKA+EL+ +C++e av+ fs+ gk y +
  AUR62028581-RA 205 PIDNKSRKLVTFSKRRVGLFKKASELCSMCGVECAVVSFSPAGKAYSF 252
                     59******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MLSNDAGVSL MASGMKKKHD KYWENVDNVN LLLYIADILD PRRKMGYTKW AINQQYDSEK  60
VKYLCDKVMQ TLNDMYELYI SENPPNESIL PKTSDFSEEV EDMDSDVDVA ELEFERQVGS  120
CVGVQGKNEL AKYLEDDGEV NPAGKSFDCL GWWKKYGGYK EEFRQPSRRG EEAAASRTGT  180
EFFNSSMAAV GKVSGKGKRK IDIIPIDNKS RKLVTFSKRR VGLFKKASEL CSMCGVECAV  240
VSFSPAGKAY SFGHPNADEI IGRAFPTSRL DEDVLAQPID DMGLDDLERF KVALESLRSQ  300
VASKVKGNN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-24M-type_MADS family protein