PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028197-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 361aa MW: 39819.9 Da PI: 7.3588

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028197-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6.1e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ ++ g++R++k+c++rw +yl AUR62028197-RA 15 KGPWTPEEDKKLVDYIDRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	55.9	1e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++ lG++ W++Ia++++ gRt++++k++w+++l AUR62028197-RA 68 RGKFTDEEEQTIINLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MMVRSPCCDE SGLKKGPWTP EEDKKLVDYI DRHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTDEEEQTII NLHSVLGNKW SAIASHLPGR TDNEIKNFWN THLKKKLLQM 120 GIDPVTHRPR TDLNLLANLP QLLMAANLSN SLMMNNSTGN GVPNLEDTLR LIDSDATQLA 180 KFHILNNMLQ VLSSSSSNPP AIASQITSLL CNSTMPFQNP LNDNLLRLAN SQMENGLTGA 240 ISSQFPPSNP LASSSLESPA TPQFQPNFKH GRHRSYTSNE YHESKQTGVE ILTPDSLMPS 300 LAPASPDHCS KLISQKGNAI MSSNPSSATT TANPFEAAAA DWTNDLIDDA SHSYWRDIIE 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MMVRSPCCDE SGLKKGPWTP EEDKKLVDYI DRHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTDEEEQTII NLHSVLGNKW SAIASHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNLLANLP QLLMAANLSN SLMMNNSTGN GVPNLEDTLR LIDSDATQLA  180
KFHILNNMLQ VLSSSSSNPP AIASQITSLL CNSTMPFQNP LNDNLLRLAN SQMENGLTGA  240
ISSQFPPSNP LASSSLESPA TPQFQPNFKH GRHRSYTSNE YHESKQTGVE ILTPDSLMPS  300
LAPASPDHCS KLISQKGNAI MSSNPSSATT TANPFEAAAA DWTNDLIDDA SHSYWRDIIE  360
*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-88	MYB family protein