PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028163-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 826aa MW: 92723.8 Da PI: 6.0267

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028163-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.4	3e-15	623	715	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++Y+e++k+ GF++++++ ++ ++ +t+ ++vC+kegk ++ k+ ++++ ++ tgCkak++ + +k +g+w++t+++leHnH++ AUR62028163-RA 623 EYYHEFGKQNGFQMKIRSRENVkgtecGNKYDCTRLRLVCKKEGKFVPRGKD---PSKPTRSEFTGCKAKITATFDKsSGEWKLTTVVLEHNHPI 714 69***********999888766666566789************999...88999999*******9999*************98 PP FAR1 90 a 90 + AUR62028163-RA 715 N 715 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MSTHIAVFAF PFTSHVANLL VTIRKLASLA PQNKVQFSFF STPNSINSLF QKESKTCEDH 60 PNIKAYEIWD GKPVGYVSKG NPLEEIDLFV KGATWPGVLK KAVEEAEEDV GVKVSCVMGD 120 AFLYYLCDLS KEIEVPWVPI WNGGEHAFYV HVYTDVIRQR FGTQGIGARE EETLDFIPAL 180 SKIRLKDLQD GIVSGNLNSP ISQMLHKMSQ NLPYASAICM GGCEEFDPVV IGDLKSKFSK 240 VFPAGPLCLV IEPPKMADKY NCLGWLDKQR TNSVVYVSFG YSATPPPNEI FALAEALQAS 300 GFKFLWSIKD HLKVHFPNNF LENNGENGMM VPWTPQREVL AHDAVGVFIT HFGYHSVVES 360 IVPEVPMIGR PFFGDQKLNG RLVEAVWEIG LIVEGGTFTK EGVLKNLNQI LLGDEGKKMR 420 ANIKNRKELL VKAIASNGSI NKNWYVSKGN PLEEIDLFVK AATRPGALKK VVEEAEEDVG 480 VKVSCVMGDA FLSYILCDLG KEIEVPWVPC WNSGEHSFYV HVYTDVIRQR NLKMDESGIA 540 KVVPSTIDLN MEYQGEDSEY DSSDMDFDIN SEPDFICDEV NENIDVLRDD DDTNGTNESH 600 PMLEKLAPPN VRMIFASYED VIEYYHEFGK QNGFQMKIRS RENVKGTECG NKYDCTRLRL 660 VCKKEGKFVP RGKDPSKPTR SEFTGCKAKI TATFDKSSGE WKLTTVVLEH NHPINPSNSK 720 FMRNYRFISP HNKDVILTNE KAGVPIGRNF ATFAVRYGGF GAVPFSEKDC RNLVSKHRRL 780 CLKEGDFSAM EKHFMDMSTK DKKIFYKYDT SDATIGSNIT QTYGE*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MSTHIAVFAF PFTSHVANLL VTIRKLASLA PQNKVQFSFF STPNSINSLF QKESKTCEDH  60
PNIKAYEIWD GKPVGYVSKG NPLEEIDLFV KGATWPGVLK KAVEEAEEDV GVKVSCVMGD  120
AFLYYLCDLS KEIEVPWVPI WNGGEHAFYV HVYTDVIRQR FGTQGIGARE EETLDFIPAL  180
SKIRLKDLQD GIVSGNLNSP ISQMLHKMSQ NLPYASAICM GGCEEFDPVV IGDLKSKFSK  240
VFPAGPLCLV IEPPKMADKY NCLGWLDKQR TNSVVYVSFG YSATPPPNEI FALAEALQAS  300
GFKFLWSIKD HLKVHFPNNF LENNGENGMM VPWTPQREVL AHDAVGVFIT HFGYHSVVES  360
IVPEVPMIGR PFFGDQKLNG RLVEAVWEIG LIVEGGTFTK EGVLKNLNQI LLGDEGKKMR  420
ANIKNRKELL VKAIASNGSI NKNWYVSKGN PLEEIDLFVK AATRPGALKK VVEEAEEDVG  480
VKVSCVMGDA FLSYILCDLG KEIEVPWVPC WNSGEHSFYV HVYTDVIRQR NLKMDESGIA  540
KVVPSTIDLN MEYQGEDSEY DSSDMDFDIN SEPDFICDEV NENIDVLRDD DDTNGTNESH  600
PMLEKLAPPN VRMIFASYED VIEYYHEFGK QNGFQMKIRS RENVKGTECG NKYDCTRLRL  660
VCKKEGKFVP RGKDPSKPTR SEFTGCKAKI TATFDKSSGE WKLTTVVLEH NHPINPSNSK  720
FMRNYRFISP HNKDVILTNE KAGVPIGRNF ATFAVRYGGF GAVPFSEKDC RNLVSKHRRL  780
CLKEGDFSAM EKHFMDMSTK DKKIFYKYDT SDATIGSNIT QTYGE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	6e-17	FAR1 family protein