PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62028080-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 796aa MW: 88819.8 Da PI: 4.5424

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62028080-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.7e-09	651	694	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rWT+++ el+++ q+G++ + I + ++ gRt+ q+k+++ k AUR62028080-RA 651 RARWTKQDTELFYQSLSQFGSD-LSMIQQLFP-GRTRHQIKLKYKK 694 569*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence
MKWEYEYTIS SSWFVLPFDD CQSRNVCEYH DDTPRDQLIV LGPHGKFMER RATNAITHTP 60 NSVTDMYPFA AEALARQETD RLTSLSLDSL LFPTDTAFNY LVSVKDNKHI SLSDLLGKNV 120 IEAAMDFLVF SCLIMDFVDD PFAEPVVAKA VGRFQPKAKP RPKKGPSVAV KATKEPPVTS 180 VLQLNKSDDN VEKNLEVPKS SSITDNESSG LPAEAKEVAG SAVTGNSEIA GLSTNEAETP 240 TANAPSVHNE KELSDFHSVS SASASLLRPC NAQAAPDQYE DQTFENQEGY KESIECGDGD 300 LQIDVEQLEA GDFSCLDSLN VMTEGAAASG TRAVKFKPKP KAQSDRRKKD SAEAVSHLPR 360 SQNLPSESEH MTSSGSIHAG EPNTVSDVVH MRLDGDFSLD PSVYQPDTVV SEDIDSFMPE 420 KLPQQSGEDH REQNSYDALG SSAKSVDGGV LSAFEGNEDG YEPQDGMNGG LNNNNSSYDK 480 APDNSALNRD ENNEGGYIGE ETLQKKRPRK SKKVAAENNK PARKRKKATQ ELNEYVEKPP 540 KKFPRATRRK RCVNKSLLEA PEDELDLQRV PIRDLIILAE YKERQAKKEA AAAMPPPTSE 600 RNNNLSPEDL PYDDNESFDQ DGDNYDNPST LRVQKDTGYF NYQSFMTKET RARWTKQDTE 660 LFYQSLSQFG SDLSMIQQLF PGRTRHQIKL KYKKEERQNP MRVNDALTCR TQDLSHFELV 720 IKRLKEQAAQ DEKIDNDDSV CVTCEDEGPE EVFNAHEDVS NAKQNEEAQV VDQESPKLHY 780 SEDEEFDWSS YKSEL*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence

MKWEYEYTIS SSWFVLPFDD CQSRNVCEYH DDTPRDQLIV LGPHGKFMER RATNAITHTP  60
NSVTDMYPFA AEALARQETD RLTSLSLDSL LFPTDTAFNY LVSVKDNKHI SLSDLLGKNV  120
IEAAMDFLVF SCLIMDFVDD PFAEPVVAKA VGRFQPKAKP RPKKGPSVAV KATKEPPVTS  180
VLQLNKSDDN VEKNLEVPKS SSITDNESSG LPAEAKEVAG SAVTGNSEIA GLSTNEAETP  240
TANAPSVHNE KELSDFHSVS SASASLLRPC NAQAAPDQYE DQTFENQEGY KESIECGDGD  300
LQIDVEQLEA GDFSCLDSLN VMTEGAAASG TRAVKFKPKP KAQSDRRKKD SAEAVSHLPR  360
SQNLPSESEH MTSSGSIHAG EPNTVSDVVH MRLDGDFSLD PSVYQPDTVV SEDIDSFMPE  420
KLPQQSGEDH REQNSYDALG SSAKSVDGGV LSAFEGNEDG YEPQDGMNGG LNNNNSSYDK  480
APDNSALNRD ENNEGGYIGE ETLQKKRPRK SKKVAAENNK PARKRKKATQ ELNEYVEKPP  540
KKFPRATRRK RCVNKSLLEA PEDELDLQRV PIRDLIILAE YKERQAKKEA AAAMPPPTSE  600
RNNNLSPEDL PYDDNESFDQ DGDNYDNPST LRVQKDTGYF NYQSFMTKET RARWTKQDTE  660
LFYQSLSQFG SDLSMIQQLF PGRTRHQIKL KYKKEERQNP MRVNDALTCR TQDLSHFELV  720
IKRLKEQAAQ DEKIDNDDSV CVTCEDEGPE EVFNAHEDVS NAKQNEEAQV VDQESPKLHY  780
SEDEEFDWSS YKSEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	349	KPKPKAQSDRRKK
2	505	527	KKRPRKSKKVAAENNKPARKRKK
3	522	528	ARKRKKA
4	523	527	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-42	MYB_related family protein