PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027780-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 267aa    MW: 30137.1 Da    PI: 9.7427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027780-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-06118137120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  nL+ H+
  AUR62027780-RA 118 FSCHLCSKTFNRYNNLQMHM 137
                     89*****************9 PP
2zf-C2H212.20.00056202224123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +Cgks   k + ++H +++
  AUR62027780-RA 202 FSCRKCGKSLAVKGDWRTHEKNC 224
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MKPFTTFSCT SSLGSFSNKD DDKRIEPLNL FPGKAESFSS VKDFNNAKKF NNNEKGGEDD  60
DNDGVTVALH IGLPNHDNLV RKGNGNNVGD NNNNQLRMMT NNYWIPSDVQ ILAGFTHFSC  120
HLCSKTFNRY NNLQMHMWGH GSQYRKGPDS LKGAQPRAIL SVPCYCCEEG CKNNINHPKS  180
KPLKDFRTLQ THYKRKHGHK PFSCRKCGKS LAVKGDWRTH EKNCGKRWLC LCGSDFKHKR  240
SLKDHIRAFG SGHAPFPPSF DTMQLL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-102C2H2 family protein