PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027776-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 629aa MW: 70995.5 Da PI: 8.4872

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027776-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.7e-09	571	617	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ + lv+a k ++++ +W+++a ++ g+t +qck ++ ++ AUR62027776-RA 571 VWSSVQERALVQALKTFPKEtpqRWERVATAVP-GKTMNQCKKKFASL 617 7******************************.*******99765 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MMAQQVSNVR LISYSQELED GKPLYVSSNC LPLKVSKYEP AGHSFHAVAL RLSGHCEEVS 60 DKDDDQSASN DKEQTFTPSF ESYSGKSKKK SGGDGKQQQD HYALLGLAHL RYLATEEQIR 120 KSYRDVALKY HPDKQAALLL QEETEASKLA KKDEIENHFK AIQEAYELLI DPQKRRMYDS 180 TDEFDDEIPT DCAPQDFFKV FGPAFMRNSR WSVHQPAPSL GDENSSFDEV DKFYNFWYSF 240 KSWREFPHAD EFDLEQAESR DHKRWMERQN AKLSEKARKE EYTRVRSLVD NAYKKDPRIA 300 KRKEFEKAEK KRKKEAKFLA KKLEEEEAAR IAEEEKRKKE EEDKKAAEAA LLNKKAKEKE 360 KKLLRKERTR LRSLAAEVAS DRVFDISGDD IETLCMSLDM LRLRGLCDKI EGKEKEEQVK 420 FIKNSLNGQV DDEKSPGSSP NPKPKQAGAV KANGSMNSSR TSRRWEVISE YIGTGRSVEE 480 ILKATKSVLL QKPDSSKAFD SFLEKRKPAA TISSPLSTRE EVQGVPIVNG TDTGSAAGAD 540 ASSSTTPTDT PNAPSSTDSP AASSGSSDPD VWSSVQERAL VQALKTFPKE TPQRWERVAT 600 AVPGKTMNQC KKKFASLKET FRSKKTTG*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MMAQQVSNVR LISYSQELED GKPLYVSSNC LPLKVSKYEP AGHSFHAVAL RLSGHCEEVS  60
DKDDDQSASN DKEQTFTPSF ESYSGKSKKK SGGDGKQQQD HYALLGLAHL RYLATEEQIR  120
KSYRDVALKY HPDKQAALLL QEETEASKLA KKDEIENHFK AIQEAYELLI DPQKRRMYDS  180
TDEFDDEIPT DCAPQDFFKV FGPAFMRNSR WSVHQPAPSL GDENSSFDEV DKFYNFWYSF  240
KSWREFPHAD EFDLEQAESR DHKRWMERQN AKLSEKARKE EYTRVRSLVD NAYKKDPRIA  300
KRKEFEKAEK KRKKEAKFLA KKLEEEEAAR IAEEEKRKKE EEDKKAAEAA LLNKKAKEKE  360
KKLLRKERTR LRSLAAEVAS DRVFDISGDD IETLCMSLDM LRLRGLCDKI EGKEKEEQVK  420
FIKNSLNGQV DDEKSPGSSP NPKPKQAGAV KANGSMNSSR TSRRWEVISE YIGTGRSVEE  480
ILKATKSVLL QKPDSSKAFD SFLEKRKPAA TISSPLSTRE EVQGVPIVNG TDTGSAAGAD  540
ASSSTTPTDT PNAPSSTDSP AASSGSSDPD VWSSVQERAL VQALKTFPKE TPQRWERVAT  600
AVPGKTMNQC KKKFASLKET FRSKKTTG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	314	KKRKK
2	310	338	KKRKKEAKFLAKKLEEEEAARIAEEEKRK
3	311	339	KKRKKEAKFLAKKLEEEEAARIAEEEKRK
4	336	359	KRKKEEEDKKAAEAALLNKKAKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein