PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62027124-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 206aa MW: 22219.7 Da PI: 8.2404

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62027124-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ +L H +H AUR62027124-RA 60 FECSSCKKTFGSHQELGGHRASH 82 89**************9999888 PP
2	zf-C2H2	15.4	5.2e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C k+F++ L H+r+H AUR62027124-RA 130 HKCGVCLKVFPTGQALGGHMRSH 152 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MRCHPEREWR GINPPPHLRR RSLPPTPTTT TDDHEVAASL LLLAAGPVSP DVALASPARF 60 ECSSCKKTFG SHQELGGHRA SHKNVKGCFA ITKSATDVED DQCMIMQSGS SHEEAIGLGL 120 SLGLGLGVGH KCGVCLKVFP TGQALGGHMR SHWEKSEEPA LRSLFGLPLG SDSRPNVVLI 180 STYRPNFWRM VLLLLLLLIL PITCN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	3e-43	C2H2 family protein