PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62027115-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 751aa    MW: 81877.7 Da    PI: 6.2768
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62027115-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4063.6e-1243807352374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs++++e a+++L ++se a+p g++ qR+aayf eA++arl++s+ ++  alp+ +      ++ ++a+++f+ +sP++kfsh+
  AUR62027115-RA 380 LTLLLQCAEAVSADKFEDANKMLVEISEWATPFGTSAQRVAAYFSEAMSARLVSSCLGIHTALPTIPHY----QKLVSAFQVFNGISPFVKFSHF 470
                     579*********************************************************999999985....89999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + va+++ +l+l
  AUR62027115-RA 471 TANQAIQEAFQREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFAEKLGLPFEFIP-VAEKVGNLDL 560
                     *****************************************************....***************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L l+++l Pkvv+vveq++++ ++sFl rf+ea++yysalfdsl a+++++seer++vE
  AUR62027115-RA 561 ERLHVSKREAVAVHWLQ--HSLYDVTGSDTN----TLYLLQRLAPKVVTVVEQDLSR-TGSFLGRFVEAIHYYSALFDSLGASYGEDSEERHVVE 648
                     ****************9..999999999999....********************99.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy++ e+sg+l lgWkd  L+++SaWr
  AUR62027115-RA 649 QQLLSREIRNVLAVGGPSRSGEPK-FASWREKMQQSGFRGISLAGNAAAQATLLLGMFPSDGYTLVEDSGTLKLGWKDLCLLTASAWR 735
                     ******************888877.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MSSTNNNSHS SNQANLGCDS SKMVRKRTAS EMERPSSNPI EISDHRLISR QLPNQQHHQP  60
SLHQQQFTPV NDSAVFNPTD GSGSLTDQQQ PLVCGFSGLP LFPPERPSSD NNNTTNRSSM  120
SMSSFSVSGS GSVVAGSMED PGWIDGIIKD LIQSSNSISI PQLIQNVREI IYPCNPNLGA  180
VIEFRLRSLT DPLIAPPLQP PQQQQQQQLP PPPHHHVVSH YQKNHNHVSS QPGLHNKAYY  240
NLSDIEYYSS LGGGDYYSSL GGGALECGGN IGWGGAPPPL PRPPQQPINE GCPKTTTTQA  300
GEGILDQNPE NFPNNSRDSD PAVGSSSAAK VGTMEESPPV AATPPTPTPP PSQQVTTVAK  360
AREREEFRQR QRDEEGLHLL TLLLQCAEAV SADKFEDANK MLVEISEWAT PFGTSAQRVA  420
AYFSEAMSAR LVSSCLGIHT ALPTIPHYQK LVSAFQVFNG ISPFVKFSHF TANQAIQEAF  480
QREERVHIID LDIMQGLQWP GLFHILASRP GGPPFVRLTG LGTSMEALEA TGKRLSDFAE  540
KLGLPFEFIP VAEKVGNLDL ERLHVSKREA VAVHWLQHSL YDVTGSDTNT LYLLQRLAPK  600
VVTVVEQDLS RTGSFLGRFV EAIHYYSALF DSLGASYGED SEERHVVEQQ LLSREIRNVL  660
AVGGPSRSGE PKFASWREKM QQSGFRGISL AGNAAAQATL LLGMFPSDGY TLVEDSGTLK  720
LGWKDLCLLT ASAWRPSHAH TMSTVCTRSQ *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein