![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62027090-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22105.2 Da PI: 6.3054 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.2 | 1.4e-25 | 9 | 54 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 +ri+n + rqvtf+kRr+g++KKA+ELS+LCdaev +iifsstgkl AUR62027090-RA 9 ERIDNLTSRQVTFTKRRKGLFKKAKELSILCDAEVGIIIFSSTGKL 54 69*******************************************9 PP | |||||||
2 | K-box | 71.4 | 2.7e-24 | 53 | 136 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ e++ L++++e+L+++ R+llGedL++Ls+++L+ Le qLe + k iRs+K+e++ ++i+el k e +++en++L+kk+ AUR62027090-RA 53 KLWKVEAEGLRQQLEELRKNSRQLLGEDLSELSIEHLETLEAQLEMGTKAIRSRKEEIFQNKIQELNKTEILVHQENMELHKKI 136 56999*****************************************************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence |
MGRGKITIER IDNLTSRQVT FTKRRKGLFK KAKELSILCD AEVGIIIFSS TGKLWKVEAE 60 GLRQQLEELR KNSRQLLGED LSELSIEHLE TLEAQLEMGT KAIRSRKEEI FQNKIQELNK 120 TEILVHQENM ELHKKINLMR QEMIELQKKV ELNDTNYSIQ VSGGQGRDDQ EGGISSGGAA 180 SAYDTYDPIE LKLS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-54 | MIKC_MADS family protein |