PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62027033-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 20733.4 Da PI: 7.3436 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.8 | 2.9e-23 | 22 | 70 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ie+k ++qvtf+kRr+g++KKA+EL++LC+aevav+ fs gk++ + AUR62027033-RA 22 EKIEDKARKQVTFTKRRKGVFKKASELCTLCNAEVAVLTFSGAGKVFSF 70 57********************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MSMAEESEVK SKPLGKRKIA IEKIEDKARK QVTFTKRRKG VFKKASELCT LCNAEVAVLT 60 FSGAGKVFSF GHPSADEVIN RYINGSKSSS SSLSLDSSSV TNEHVGKEKL LHGATCSDEQ 120 DLCWWQKPVE GLGLEELEKI MTSLIELMNN VASKIGNCWS NNNNVGSSAN TPKSGLDLNE 180 AYSPKSNGAD E* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-29 | M-type_MADS family protein |