PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025742-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 350aa MW: 39968.5 Da PI: 8.9891

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025742-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.1	3.8e-10	8	79	14	88
FAR1 14 vrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 v +++ kk+++++++ +r ++Cs g+++ +++ ++ rtgCka ++ +k +g ++v k e eHnH+ AUR62025742-RA 8 VHVKEIKKTRNDKTVRQRFLTCSYAGFKKIKSDV----LYQKRDFRTGCKAYIQFDVDKeSGLYCVVKHEMEHNHS 79 67788899999****************98877....7778889*******9999*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MLLSMDSVHV KEIKKTRNDK TVRQRFLTCS YAGFKKIKSD VLYQKRDFRT GCKAYIQFDV 60 DKESGLYCVV KHEMEHNHSR VPVSKRHLIR SHRKVSGDQL AMVTSLSENG IPIADAYRVI 120 RDQAGCEANL SFLQRDLYVA LSGEKKKNFD GCDTKQLISY FKERKSKEYV FYYDFDVDEK 180 EAINECASRI EILLRKDGNE EGHGKENDDN TDAQAAAQCL ESGNLLEPQD VIQANVFQDS 240 PTSAEKPIEN EKECMVKDPI RRRKKGQKNI RLKSTQEKIC NKLKGQKIKS WKKKSAKGVS 300 IIKKKAQDTI KDSLTVLEGN TLAHSSLFGG SIEYFEPDEY FEVHVTPFT*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MLLSMDSVHV KEIKKTRNDK TVRQRFLTCS YAGFKKIKSD VLYQKRDFRT GCKAYIQFDV  60
DKESGLYCVV KHEMEHNHSR VPVSKRHLIR SHRKVSGDQL AMVTSLSENG IPIADAYRVI  120
RDQAGCEANL SFLQRDLYVA LSGEKKKNFD GCDTKQLISY FKERKSKEYV FYYDFDVDEK  180
EAINECASRI EILLRKDGNE EGHGKENDDN TDAQAAAQCL ESGNLLEPQD VIQANVFQDS  240
PTSAEKPIEN EKECMVKDPI RRRKKGQKNI RLKSTQEKIC NKLKGQKIKS WKKKSAKGVS  300
IIKKKAQDTI KDSLTVLEGN TLAHSSLFGG SIEYFEPDEY FEVHVTPFT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	289	RRRKKGQKNIRLKSTQEKICNKLKGQKIK
2	261	297	RRRKKGQKNIRLKSTQEKICNKLKGQKIKSWKKKSAK
3	262	290	RRRKKGQKNIRLKSTQEKICNKLKGQKIK
4	262	298	RRRKKGQKNIRLKSTQEKICNKLKGQKIKSWKKKSAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-10	FAR1 family protein