PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025096-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 602aa MW: 68358.1 Da PI: 9.1

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025096-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.9	1.3e-14	58	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll+d+v+++G ++W+ + + mg+ R++k+c++rw ++l AUR62025096-RA 58 RGPWTAEEDALLIDYVQKHGERHWNCV-QNMGLIRCGKSCRLRWTNHL 104 89*********************97.56777**********996 PP
2	Myb_DNA-binding	52.4	1.2e-16	110	153	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ + ++++++lG++ W++Ia++++ gRt++++k++w++ AUR62025096-RA 110 KGAFSPEEERIVLELHAKLGNK-WSKIAAELP-GRTDNEVKNFWNT 153 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MPRMIKKKDE FSMDYHQQTA SSKKKSIIRS CRKCGSGDEH GNICGNTDSN NNERTFKRGP 60 WTAEEDALLI DYVQKHGERH WNCVQNMGLI RCGKSCRLRW TNHLRPDLKK GAFSPEEERI 120 VLELHAKLGN KWSKIAAELP GRTDNEVKNF WNTKIKRRIK AEASILNSEG NNLKQIGKFG 180 HHFQHRKNPQ NHIYQELSIS LPITSHSSTS PFSTPTSYPV SDVLSNSGYN IINSIGINDP 240 ISSFLNNPAY KSKLMLENEA TQYDANSFDI TFPIIPKFSL TPNSNITSIT NRSHRDNSFE 300 ASSSMFTENF VDNGMLTSNR TSLPLHQMIQ EENLLATFPS NVVSYTNNRF NNMRTSWSIG 360 INSAEQNSSI INEEKSNIYN DPNGKDGVMT MISLDNNVDD SRLLDEHNSN LFSIGMKNSN 420 KEQYEETISM DDDLSSLLYD FSSSSRSLTS ELSLDPAASK RAASYRSPAR ELSLAPAKQA 480 DRASSYHPSY RSLAREFLYP KIVKSLNYNP SKVETSVETM KLHDNYVDVK LYSFMLDLIP 540 AMLRLLIGGL LRIKNWASFV QLERIMLRLL RVIQQYRIVN KIVVYKGIVT GCVFGRQEYE 600 G*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MPRMIKKKDE FSMDYHQQTA SSKKKSIIRS CRKCGSGDEH GNICGNTDSN NNERTFKRGP  60
WTAEEDALLI DYVQKHGERH WNCVQNMGLI RCGKSCRLRW TNHLRPDLKK GAFSPEEERI  120
VLELHAKLGN KWSKIAAELP GRTDNEVKNF WNTKIKRRIK AEASILNSEG NNLKQIGKFG  180
HHFQHRKNPQ NHIYQELSIS LPITSHSSTS PFSTPTSYPV SDVLSNSGYN IINSIGINDP  240
ISSFLNNPAY KSKLMLENEA TQYDANSFDI TFPIIPKFSL TPNSNITSIT NRSHRDNSFE  300
ASSSMFTENF VDNGMLTSNR TSLPLHQMIQ EENLLATFPS NVVSYTNNRF NNMRTSWSIG  360
INSAEQNSSI INEEKSNIYN DPNGKDGVMT MISLDNNVDD SRLLDEHNSN LFSIGMKNSN  420
KEQYEETISM DDDLSSLLYD FSSSSRSLTS ELSLDPAASK RAASYRSPAR ELSLAPAKQA  480
DRASSYHPSY RSLAREFLYP KIVKSLNYNP SKVETSVETM KLHDNYVDVK LYSFMLDLIP  540
AMLRLLIGGL LRIKNWASFV QLERIMLRLL RVIQQYRIVN KIVVYKGIVT GCVFGRQEYE  600
G*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	6e-52	MYB family protein