PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62024171-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 384aa    MW: 43335.6 Da    PI: 6.5672
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62024171-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.61.9e-191691786
        trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    m++ ++++k++k+lWe++s+kmr+rgf rsp++C++kw+nl k++kk k+++++ ++++  ++  ++++e
  AUR62024171-RA  1 MDSLFNTSKSNKHLWEQISAKMRDRGFDRSPTMCTDKWRNLLKEFKKAKQQMGNAANGNA-KMLCYKEIE 69
                    67889************************************************9866665.777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MDSLFNTSKS NKHLWEQISA KMRDRGFDRS PTMCTDKWRN LLKEFKKAKQ QMGNAANGNA  60
KMLCYKEIEE ILRDRNRCGS NSAGYKSPNH NSNDGVNNHS SKVDSFLQFS DKGIDDASIP  120
FGPIEANGRP TLNLERRLDH EGHPLAITAA DAVTDGGCPP SFWRETPGNG LKCTCAQLGT  180
CHALHWIGEA EMPGCHKRQF NRKSEYSSLN LSVMRVNCEL LTVDFSLADN SPEPGLCDDT  240
HPFGGRVIIV KWGDYTKRIG VEGTAEAIKD VIRSAFGLRT KRAFWLEDEE QVARSLDRDM  300
PLGTYTLHLD EGMTIKLCYE ESDHISYPGQ TISHTVEKTF YTEDDFRELM HRRGWSCLRE  360
LNGYRNIDNL DDLRPDAVYR GVT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.36e-74Trihelix family protein