PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023830-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 374aa    MW: 43227.3 Da    PI: 5.3357
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023830-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.56.5e-84236313374
            GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                     s+++ ++ q+lL+ l+e as +gd  qRla yf++AL a+ ++s+ +ly++l+  e++++  ++ ++ +  f+evsP+ +f+h++ N aIlea++
  AUR62023830-RA   2 SQKNPSKSQQLLWVLNEVASAYGDCDQRLAYYFLQALFAKANNSGLQLYNTLKIVEEKNYCFDTYVKLMLKFQEVSPWTTFGHVASNGAILEALD 96 
                     789999***************************************************98889999999989************************ PP

            GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEa 201
                     ge+ +HiiD++ + ++QWp Ll+aLa+R++++p+lR+T v+s +s ++  ++e+ ++++kfA+ +gvpf+f+v+   ++le+++ e+++++ +Ea
  AUR62023830-RA  97 GESNLHIIDLSNTLCTQWPMLLEALATRNDETPHLRLTLVVS-TSLETIIIKEITKKMEKFARLMGVPFNFHVIgGLDHLEEIKKEDFSLQDDEA 190
                     ******************************************.667999************************97788***************** PP

            GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                     ++Vn++ +l+r+      +e+ r++v+++++s++P+vv++ve+e+d+  ++++F + f e+l+++   f++le+++++ s+er k+Er   +r+i
  AUR62023830-RA 191 VVVNCIQALQRVR-----VEK-RTDVIDMIRSIKPRVVTIVEEEVDLtsTRSDFGKCFEECLRFHRLYFEMLEESFHPISNERLKLERN-RSRNI 278
                     ***********97.....555.889********************99656679************************************.9**** PP

            GRAS 295 vnvvacegaerre...rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374
                     vn +ac   e +e   r  ++++W +rl+ea + p ++++++ +++++llr+++ s+   +   e++  + l W+d+++v++SaW+
  AUR62023830-RA 279 VNSLACDDGEIEEeywRPDKASQWTKRLKEA-LCPFHFNDEILSDVQALLRRYNtSWSLALPqqEHEVGIHLKWRDETVVWASAWK 363
                     ******9877444344899**********98.99********************77776665435555667**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MSQKNPSKSQ QLLWVLNEVA SAYGDCDQRL AYYFLQALFA KANNSGLQLY NTLKIVEEKN  60
YCFDTYVKLM LKFQEVSPWT TFGHVASNGA ILEALDGESN LHIIDLSNTL CTQWPMLLEA  120
LATRNDETPH LRLTLVVSTS LETIIIKEIT KKMEKFARLM GVPFNFHVIG GLDHLEEIKK  180
EDFSLQDDEA VVVNCIQALQ RVRVEKRTDV IDMIRSIKPR VVTIVEEEVD LTSTRSDFGK  240
CFEECLRFHR LYFEMLEESF HPISNERLKL ERNRSRNIVN SLACDDGEIE EEYWRPDKAS  300
QWTKRLKEAL CPFHFNDEIL SDVQALLRRY NTSWSLALPQ QEHEVGIHLK WRDETVVWAS  360
AWKPIAPSPQ NPS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-109GRAS family protein