PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022952-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ERF

Protein Properties

Length: 384aa MW: 42676.6 Da PI: 4.6575

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022952-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.9e-20	87	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a+ ++g AUR62022952-RA 87 CKYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTALEAALAYDEAACTMYG 137 79***999.******8...3.35********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGTFDFDKAT SNTHCSSSVP FDYTRRRKSR RRRDGTDSVS ETLARWKEIN DKLYEDKNDD 60 KPVRKAPAKG SKKGCMKGKG GPENSLCKYR GVRQRTWGKW VAEIREPNRG KRLWLGTFPT 120 ALEAALAYDE AACTMYGQSA RLNLPHYPAS LMEDSRDNSA TTATTNTASY TTSSDNHSDV 180 CFGYQWDSKM DGAGVKQEDA ESDSQFDVKN AAMMLNVGTP ASTVKKEAKA DSEGGIDIND 240 YLQNLTMDEI FDVDELLGAI DAGPVSPADY VTNQGHSTNQ DYTTNQGYTM NQGYDAFRSQ 300 VENNSIQLER SESWSNQSQN PDILYQFQSQ DDAKLLGSLN YNDQVNNGAD YGFDFLKPGR 360 QEDSSLAVDD HGFLNLAELG FNY*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGTFDFDKAT SNTHCSSSVP FDYTRRRKSR RRRDGTDSVS ETLARWKEIN DKLYEDKNDD  60
KPVRKAPAKG SKKGCMKGKG GPENSLCKYR GVRQRTWGKW VAEIREPNRG KRLWLGTFPT  120
ALEAALAYDE AACTMYGQSA RLNLPHYPAS LMEDSRDNSA TTATTNTASY TTSSDNHSDV  180
CFGYQWDSKM DGAGVKQEDA ESDSQFDVKN AAMMLNVGTP ASTVKKEAKA DSEGGIDIND  240
YLQNLTMDEI FDVDELLGAI DAGPVSPADY VTNQGHSTNQ DYTTNQGYTM NQGYDAFRSQ  300
VENNSIQLER SESWSNQSQN PDILYQFQSQ DDAKLLGSLN YNDQVNNGAD YGFDFLKPGR  360
QEDSSLAVDD HGFLNLAELG FNY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	TRRRKS
2	25	34	RRRKSRRRRD
3	27	36	RRRKSRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40340.1	6e-32	ERF family protein