PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62022338-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 323aa    MW: 36475.6 Da    PI: 10.0641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62022338-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
   AUR62022338-RA 22 RGHWRPAEDEKLRKLVEQHGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                     899*****************************.***********996 PP
2Myb_DNA-binding58.51.5e-1874117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
   AUR62022338-RA  74 RKPFTEEEEERLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 117
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEDSGKNSSD NEMMKSSNSC PRGHWRPAED EKLRKLVEQH GPQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRKPFTEE EEERLLTAHR IHGNKWALIS RLFPGRTDNA VKNHWHVIMA  120
RMQRERSKQQ SNKRSSLNSS SISSSTTSST HDLLSKTWKY HGTLKNNDHS HELYKFEQNL  180
NKEMRKASTM ACLTFPRSCI SKGTYRASSS TIHPQCLLGN WLGSNNSTNS SLFEHSNGFD  240
TRFSCGRGFG SSYGVNYFSD HNKAISFGYA PLVSQSKRTT TTAMRQSSLQ EEALEDGGCG  300
RAMASNTKEV HFIDFLGVGN PS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-63MYB family protein