PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022114-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 383aa MW: 44047.9 Da PI: 9.2438

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022114-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.8	2.3e-15	40	127	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 Yn+YA + GF rk+k++ ++++ +i +r vCs g+++e+k +e + ++ + tgCka+++ e +g ++v k +HnH+ AUR62022114-RA 40 LYNNYAFKHGFGARKAKKNFREDKATIRQRFCVCSYAGFKKERKPGDEPKVYQKRNFCTGCKAMIQFDVELdSGLFVVVKHLMDHNHS 127 7**************9999888888888889*********9999************9999889************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MHSTWAYCDS RTMAMAGFTE AKESELYLKK VKSDDEAYEL YNNYAFKHGF GARKAKKNFR 60 EDKATIRQRF CVCSYAGFKK ERKPGDEPKV YQKRNFCTGC KAMIQFDVEL DSGLFVVVKH 120 LMDHNHSRVP ISQEQFGMLN SLTENGIRVA DVVRVLKNQV GDEKNLGFLC SDAYDALASE 180 KRKKFDGCDT KQLFSYFKER KSNEYDFYYD FDVDDKAESG VTPSNVWRLH IIRTFIRLAD 240 RAQIDLKSRT VIEEAIDECT NKIDILLRKD ESENQESSNT DCQSTVTQDQ GDGNLLEPQG 300 VNEECVPQTE DVNGKQKDVV QVEIKDPIKR RKKGQRNTRP KSTQEKITNK LKGQKIKSWK 360 RKTTRGVSKL KQKAQTTIKV QI*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MHSTWAYCDS RTMAMAGFTE AKESELYLKK VKSDDEAYEL YNNYAFKHGF GARKAKKNFR  60
EDKATIRQRF CVCSYAGFKK ERKPGDEPKV YQKRNFCTGC KAMIQFDVEL DSGLFVVVKH  120
LMDHNHSRVP ISQEQFGMLN SLTENGIRVA DVVRVLKNQV GDEKNLGFLC SDAYDALASE  180
KRKKFDGCDT KQLFSYFKER KSNEYDFYYD FDVDDKAESG VTPSNVWRLH IIRTFIRLAD  240
RAQIDLKSRT VIEEAIDECT NKIDILLRKD ESENQESSNT DCQSTVTQDQ GDGNLLEPQG  300
VNEECVPQTE DVNGKQKDVV QVEIKDPIKR RKKGQRNTRP KSTQEKITNK LKGQKIKSWK  360
RKTTRGVSKL KQKAQTTIKV QI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	357	KRRKKGQRNTRPKSTQEKITNKLKGQKIK
2	330	358	KRRKKGQRNTRPKSTQEKITNKLKGQKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-12	FAR1 family protein