PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021540-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 371aa MW: 41230.6 Da PI: 7.2931

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021540-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.7	3.2e-28	88	242	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl k+ i++l+ + AUR62021540-RA 88 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDTTKHDIDKLPPLpvipgsfnpsqgaygvplsssspffdasllps 182 78*************************************************************88888777777777776655554444443333 PP TCP 66 .........ssssaseceaesssssasnsssg............................kaaksaakskksqksaasalnlak 112 + + s++k+ + +++++ l l AUR62021540-RA 183 rkecdininR---------------------TnedvdvdvdeedeslvaklkywdsssmmR---SKQKGVDHHHNDQGSLGLPS 242 3322222220.....................022223333333344556666665542221...22233333333332333322 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MAARDILDLS RGVKIIILDA SDITNKHYDE ESYKEMMSLR DKDGPSYTTK QELGDSSKLS 60 TAASSSSSRQ WSSGFKNPRI VRVSRTFGGK DRHSKVCTIK GLRDRRIRLS VPTAIQLYDL 120 QDRLGLSQPS KVIDWLLDTT KHDIDKLPPL PVIPGSFNPS QGAYGVPLSS SSPFFDASLL 180 PSRKECDINI NRTNEDVDVD VDEEDESLVA KLKYWDSSSM MRSKQKGVDH HHNDQGSLGL 240 PSSHNNHHQG SSQSSSTPQP PSSLSLSSMS QFFLCPSMPT TSFFPPHQQA SFMNNSHHQV 300 ENDLRQFNRF PLSNTSPFSS SFHNNSSGLD MKPAFPLSMN HDPHLQQNDD QNRQGKSSSG 360 HNPWKESSGN *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MAARDILDLS RGVKIIILDA SDITNKHYDE ESYKEMMSLR DKDGPSYTTK QELGDSSKLS  60
TAASSSSSRQ WSSGFKNPRI VRVSRTFGGK DRHSKVCTIK GLRDRRIRLS VPTAIQLYDL  120
QDRLGLSQPS KVIDWLLDTT KHDIDKLPPL PVIPGSFNPS QGAYGVPLSS SSPFFDASLL  180
PSRKECDINI NRTNEDVDVD VDEEDESLVA KLKYWDSSSM MRSKQKGVDH HHNDQGSLGL  240
PSSHNNHHQG SSQSSSTPQP PSSLSLSSMS QFFLCPSMPT TSFFPPHQQA SFMNNSHHQV  300
ENDLRQFNRF PLSNTSPFSS SFHNNSSGLD MKPAFPLSMN HDPHLQQNDD QNRQGKSSSG  360
HNPWKESSGN *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-43	TCP family protein