PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020872-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HSF

Protein Properties

Length: 486aa MW: 53671.4 Da PI: 6.1675

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020872-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.8	4.8e-35	18	109	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y+++++++++e++sws++++sf+v+++ efa+ +Lp+yFkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F k+kk+ll++ AUR62020872-RA 18 FLLKTYDMVDNPSTNEIVSWSDSNTSFIVWNPPEFARLLLPTYFKHSNFSSFIRQLNTYGFRKIDPEK---------WEFANDDFIKDKKHLLKN 103 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k AUR62020872-RA 104 IHRRKP 109 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
METSTSGNGG GGGGPAPFLL KTYDMVDNPS TNEIVSWSDS NTSFIVWNPP EFARLLLPTY 60 FKHSNFSSFI RQLNTYGFRK IDPEKWEFAN DDFIKDKKHL LKNIHRRKPV HSHSHPPPDP 120 ERAAFEEEME KLSREKNELD AKVSGFNMHH CAAKSQLEDV TLRHCDMEKR QEKLITYLQK 180 AVQNPAFVDH LSQKIDAMDL TAYNKKRRLP RSDHFLPAGE NNFGDNQSFC RPEVANIYQQ 240 DLSNKLKLEL STAVSKMNLV SNSTHSSNED WASPTRRSSG TDPKDSELGI CTLPFATETF 300 DLSDAGTCLG FKMDASLSDK VGVKECSGLP SLQQNMVSAE ECDAICCQLN LSLASSPVQL 360 NQNAYSSRAT HMDVDASGSQ GTKPDASGSN RDGLGVASKN NHPIVNVANS SSSQETRSHN 420 QDPTPAAPAR VNDHFWEQFL TERPGASDTE EASSCYRALP GDEQEDRGSS HGISRNAKNL 480 GKLTL*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

METSTSGNGG GGGGPAPFLL KTYDMVDNPS TNEIVSWSDS NTSFIVWNPP EFARLLLPTY  60
FKHSNFSSFI RQLNTYGFRK IDPEKWEFAN DDFIKDKKHL LKNIHRRKPV HSHSHPPPDP  120
ERAAFEEEME KLSREKNELD AKVSGFNMHH CAAKSQLEDV TLRHCDMEKR QEKLITYLQK  180
AVQNPAFVDH LSQKIDAMDL TAYNKKRRLP RSDHFLPAGE NNFGDNQSFC RPEVANIYQQ  240
DLSNKLKLEL STAVSKMNLV SNSTHSSNED WASPTRRSSG TDPKDSELGI CTLPFATETF  300
DLSDAGTCLG FKMDASLSDK VGVKECSGLP SLQQNMVSAE ECDAICCQLN LSLASSPVQL  360
NQNAYSSRAT HMDVDASGSQ GTKPDASGSN RDGLGVASKN NHPIVNVANS SSSQETRSHN  420
QDPTPAAPAR VNDHFWEQFL TERPGASDTE EASSCYRALP GDEQEDRGSS HGISRNAKNL  480
GKLTL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-140	HSF family protein