PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020722-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 1093aa MW: 120031 Da PI: 6.644

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020722-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	9.9e-23	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ AUR62020722-RA 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKKLSAGDSVLFI--RDEK 227 99***************************9445444.38********************************************..5689 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ AUR62020722-RA 228 QHLLLGIRRA 237 999**997 PP
2	Auxin_resp	122.4	3.3e-40	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+ AUR62020722-RA 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAIYgQQVSPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 345 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence
MKSTTTTAVN IASQTTNNSP SSEGEKKTIN QELWQACAGP LVNLPAAGTH VVYFPQGHSE 60 QVAASLKKDV DGQIPNYTNL PAKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKEALL 120 RSDLSLKAHK PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDSVWTFRH IYRGQPKRHL LTTGWSLFVS GKKLSAGDSV LFIRDEKQHL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAIYGQQ 300 VSPGMRFRMM FETEDSGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV 360 SVWEIEPVTA PFFICPPPFL RPKRPRLPGM PDDESDVDNP FKRTMPWLGD DPHALTGMSL 420 MQWMNMPQNQ SLANPMQANF LNTLPGTLQS LPGADLSRQL GFTAPLMPHQ NNLQLNAQSP 480 VQSVQQLDQL QKSSGALNPL SSLIQSQQQL CDVSQQSSMH NLINQSLSSN HVQSQLVQSQ 540 GLVQSQNSFH QPTSLQSHQP LGNLPPQQQQ QSPGPSQQPS LNQLQQVTDN QLQLQLLQRL 600 QQQQHSLLSQ QSALQQINHV NQLQELQRSQ SDVSQSFSRA LPSSQMMDMP QAQMKSLPQS 660 QVMPQQISRS SSLTASHFSQ TPQVPKLPQQ QSGVMPELHG PAGVALNPMS NHPSSAVSSS 720 FVGAAAGGHS ALTDDIPSCS TSPSTNNGPI VTQTVVNNRG HRNYALGEGI NQSNLLSSNS 780 LETMAAHNSF QELHQKAAVK PSVNITKVES QGHLTRQTYQ NIPMDYLDTS SATSASLSQN 840 DIISQNNPLS NPQSSLLGDT GHDVEVQADV RNNIHAGASI NEQLGTSLVS DTMMTKNLPR 900 SDKDFSNNVS SGCMLSTYEN SKDAQQELSS SMVTQSFGVP DVAFNSIDSA LSDGSFMNRG 960 AWGPPPPYQR LRTYTKVYKR GAVGRSIDVT RYSGYEELKQ DLARMFGIEG QMEDRGRVGW 1020 KLVYVDHEND VLLVGDDPWD DFVNCVRCVK ILSPQEVQQM SLDGDFGNAS LQNQTCSSSD 1080 GGNQAVVMQA EF*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence

MKSTTTTAVN IASQTTNNSP SSEGEKKTIN QELWQACAGP LVNLPAAGTH VVYFPQGHSE  60
QVAASLKKDV DGQIPNYTNL PAKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKEALL  120
RSDLSLKAHK PQTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDSVWTFRH IYRGQPKRHL LTTGWSLFVS GKKLSAGDSV LFIRDEKQHL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAIYGQQ  300
VSPGMRFRMM FETEDSGTRR YMGTITGISD LDPVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SVWEIEPVTA PFFICPPPFL RPKRPRLPGM PDDESDVDNP FKRTMPWLGD DPHALTGMSL  420
MQWMNMPQNQ SLANPMQANF LNTLPGTLQS LPGADLSRQL GFTAPLMPHQ NNLQLNAQSP  480
VQSVQQLDQL QKSSGALNPL SSLIQSQQQL CDVSQQSSMH NLINQSLSSN HVQSQLVQSQ  540
GLVQSQNSFH QPTSLQSHQP LGNLPPQQQQ QSPGPSQQPS LNQLQQVTDN QLQLQLLQRL  600
QQQQHSLLSQ QSALQQINHV NQLQELQRSQ SDVSQSFSRA LPSSQMMDMP QAQMKSLPQS  660
QVMPQQISRS SSLTASHFSQ TPQVPKLPQQ QSGVMPELHG PAGVALNPMS NHPSSAVSSS  720
FVGAAAGGHS ALTDDIPSCS TSPSTNNGPI VTQTVVNNRG HRNYALGEGI NQSNLLSSNS  780
LETMAAHNSF QELHQKAAVK PSVNITKVES QGHLTRQTYQ NIPMDYLDTS SATSASLSQN  840
DIISQNNPLS NPQSSLLGDT GHDVEVQADV RNNIHAGASI NEQLGTSLVS DTMMTKNLPR  900
SDKDFSNNVS SGCMLSTYEN SKDAQQELSS SMVTQSFGVP DVAFNSIDSA LSDGSFMNRG  960
AWGPPPPYQR LRTYTKVYKR GAVGRSIDVT RYSGYEELKQ DLARMFGIEG QMEDRGRVGW  1020
KLVYVDHEND VLLVGDDPWD DFVNCVRCVK ILSPQEVQQM SLDGDFGNAS LQNQTCSSSD  1080
GGNQAVVMQA EF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein