PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020307-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 306aa MW: 33128.4 Da PI: 5.6944

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020307-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.5e-08	9	41	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++ fC+ + +lC +C ++H AUR62020307-RA 9 KLCDSCKSASATVFCRADTAYLCISCDAKIHAA 41 68*****************************54 PP
2	zf-B_box	27.3	7.2e-09	51	96	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + +lC++C +H+ H++vpl AUR62020307-RA 51 VWVCEVCEHAPATVTCKADAAHLCATCDRDIHSAnplarrHDRVPL 96 689*****************************66899999999986 PP
3	CCT	70.6	3.9e-24	235	278	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ AUR62020307-RA 235 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 278 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MGGGLMAAKL CDSCKSASAT VFCRADTAYL CISCDAKIHA ANKLASRHAR VWVCEVCEHA 60 PATVTCKADA AHLCATCDRD IHSANPLARR HDRVPLSPFY DPLSPPPPGE QNSPSXXXXX 120 XXKSAAINKL FGDDYYSDAD EAEAASWLLP NPNKQDEPKS IDYLFSGAAD EADAIDPYLD 180 LDFGAEPKPD PDLSADGVSS SSLDYGVVPD AGAMADVAST GFDKQQQMKM IGMDREARVL 240 RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDV EAEVSAASVD GLFASDPGYG 300 VVPSF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	9e-82	CO-like family protein