PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019300-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 697aa MW: 75481.8 Da PI: 6.1384

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019300-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg AUR62019300-RA 273 PCPEFRK-GTCRRGDMCEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MDVKTSNSSE VFEAKISFSE LLELAADNDV EGFKQCIETK PNVIDEIGLW YGRQLGARGM 60 VLEYRTPLMV ASMYGSLDVM KFILSISEVD VNCACGPDKC TALHSAASGG SVDAVDAVKL 120 LLANVADPNL VDAKGNRPCD VITVSQMLPQ LQVALEDMLS CHGSTDQKDL RDLGNGLKVA 180 PLVIPTLSEN KSISSGLEAP SSPMSAKKEY PVDPSLPDIK NSIYATDDFR MYSFKIRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH 300 PAQYRTRLCK DGTSCNRRVC FFAHTPEELR PLYASTGSAV PSPRSVASAA AVMDMAAALN 360 LFPGSPSAAS AMSPSPFTPP LSPSGNGISH SAGWQQQNIP TLHLPGSNIQ ANNIQSSRLR 420 SSLNARDIPA EELSMLQDME QRHILNDMSC FAHGNLSARP KSLAPSNLDE LFSAEISSPR 480 YSDPLAASVF SPSHKSAVFN HFQQQQQSML SPINTKVFSP KPVDHSLLQP SFGPSSPGMM 540 SSPRGIDPQS SFNARLSALA LRDKHQQMRS LSARDLGANL PRDLIPETGG ISGSPVSVGS 600 WSKWDPSSNG RADWSINGDE LTHLKRSYTV GNNGEEPDLS WVQSLVKDSP SSENKEVPSN 660 AVSGSMLCAD GSNSNSQEQS VDHSTLGAWL DQIAAQ*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MDVKTSNSSE VFEAKISFSE LLELAADNDV EGFKQCIETK PNVIDEIGLW YGRQLGARGM  60
VLEYRTPLMV ASMYGSLDVM KFILSISEVD VNCACGPDKC TALHSAASGG SVDAVDAVKL  120
LLANVADPNL VDAKGNRPCD VITVSQMLPQ LQVALEDMLS CHGSTDQKDL RDLGNGLKVA  180
PLVIPTLSEN KSISSGLEAP SSPMSAKKEY PVDPSLPDIK NSIYATDDFR MYSFKIRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGTSCNRRVC FFAHTPEELR PLYASTGSAV PSPRSVASAA AVMDMAAALN  360
LFPGSPSAAS AMSPSPFTPP LSPSGNGISH SAGWQQQNIP TLHLPGSNIQ ANNIQSSRLR  420
SSLNARDIPA EELSMLQDME QRHILNDMSC FAHGNLSARP KSLAPSNLDE LFSAEISSPR  480
YSDPLAASVF SPSHKSAVFN HFQQQQQSML SPINTKVFSP KPVDHSLLQP SFGPSSPGMM  540
SSPRGIDPQS SFNARLSALA LRDKHQQMRS LSARDLGANL PRDLIPETGG ISGSPVSVGS  600
WSKWDPSSNG RADWSINGDE LTHLKRSYTV GNNGEEPDLS WVQSLVKDSP SSENKEVPSN  660
AVSGSMLCAD GSNSNSQEQS VDHSTLGAWL DQIAAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein