PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019220-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 299aa MW: 31522.7 Da PI: 9.8292

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019220-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	1e-07	101	126	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C f CkyGd+C+FaHg+ AUR62019220-RA 101 KTKICTKFNSPEGCKYGDKCHFAHGE 126 8999999999999***********96 PP
2	zf-CCCH	34.8	2.8e-11	265	289	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +GdrC+FaHg AUR62019220-RA 265 FKTRLCENFTK-GSCTFGDRCHFAHG 289 79*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MDFGGPRKRG RHEGSLNGNG GFKKSRPDFG VESWGELVKV LGFKLFVTSG CPFGEGCHFL 60 HHVPGGFKAV SQMLNLGGAP VPPPRNVAPS YSDGPATPSG KTKICTKFNS PEGCKYGDKC 120 HFAHGERQLG RPSIPSYEDP RGMGYMSGRM GGRMEPPPPG IGAAANFGES STAKLSIDAA 180 LAGAVIGKSG INSKQICRVT GVKLSIRDHE TDSNKRNIQL EGTFDQIKQA SSMVEELIRN 240 VKAASGGPPV RQSTGHGAPG GGSNFKTRLC ENFTKGSCTF GDRCHFAHGA DEMRKSAI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	7e-57	C3H family protein