PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62019016-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 349aa    MW: 39366.2 Da    PI: 5.3585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62019016-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.3e-222876149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ri ++++++vtfskRr g++KKA+EL+ LC++e av+ fs++gkl+ +
  AUR62019016-RA 28 ERIADQTRKHVTFSKRRLGLFKKASELCALCGVEMAVLTFSERGKLFCF 76
                    69********************************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MANNKETEDG KKEVFRTRSN GRRKIPIERI ADQTRKHVTF SKRRLGLFKK ASELCALCGV  60
EMAVLTFSER GKLFCFGHPN SDNIIRRYLN LGSFYDEPAG IGLMVEEQNR QRDEIKRKTD  120
EKKRATNRNV VEKKKVGEPV DDEKNCQSSG TNEGCGNWWE VAAVNEMGLY ELEQFKACLM  180
ELRKNVAEKA EELTENSLMY SSCQAGNVVI DQLDTNQNLS NDVGCNSSGS STIGNTDFWD  240
NVRDFENPVL GMMSDSSHLI SGDDKVANVD VSQSYKFRFM NEVHMMNEVD LESGRDVAHF  300
SNLSQRMGVF NFTVMNQYYQ APMMEDPKGA LTNPGVMPQG FKYEGGQL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-28M-type_MADS family protein