PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62018777-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB_related

Protein Properties

Length: 485aa MW: 52908.7 Da PI: 7.9381

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62018777-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.2	3.2e-07	429	470	4	43
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 W+ Ed l++a k ++++ +W++Ia+ ++ g+t c r AUR62018777-RA 429 WSSTEDIALLNALKAFPKEvamRWEKIAAAVP-GKTKAACMKR 470 ******************************.*****887 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MAQLKANLKL RACCGALPTK VGLSKRLQND DRVCGLCGVE EETELHCMRD CIVARLIWDE 60 SGLENVFGVG HGSFGDAALA YLEKSPKSGH GFFMTLMVEL GGKEEKGGGC AAPAARQRWK 120 PPRRNEWKLN VDGGVVEGLG SCAGAVIRGG DGAAVNSAVE CGYKCLVVES DCLGLINALD 180 SRERGSSCFH LVLDDIYHVC LSLDFVSWSF VRREGNKVAH ELAHLPWVII NPLFLWLSLS 240 FLIGPFAPIS LTAGDIRVGQ GKIVDFPPET EAIDAEESKK KLPNRRNRGK RSEFDGVIAN 300 GSSDFVKNSE NLVDLKEKDK GFSKLGGNVD GVVIEEKEWS EEDLGLLRKL IVKYPVGKPK 360 RWEVIAEGFK GRHSVESVIS KAKSLGKEKP VDSDSYSKFL KDRKAVDKRV EDENVAVGKE 420 ESGGEVITWS STEDIALLNA LKAFPKEVAM RWEKIAAAVP GKTKAACMKR VSELKKEFRS 480 SKAS*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MAQLKANLKL RACCGALPTK VGLSKRLQND DRVCGLCGVE EETELHCMRD CIVARLIWDE  60
SGLENVFGVG HGSFGDAALA YLEKSPKSGH GFFMTLMVEL GGKEEKGGGC AAPAARQRWK  120
PPRRNEWKLN VDGGVVEGLG SCAGAVIRGG DGAAVNSAVE CGYKCLVVES DCLGLINALD  180
SRERGSSCFH LVLDDIYHVC LSLDFVSWSF VRREGNKVAH ELAHLPWVII NPLFLWLSLS  240
FLIGPFAPIS LTAGDIRVGQ GKIVDFPPET EAIDAEESKK KLPNRRNRGK RSEFDGVIAN  300
GSSDFVKNSE NLVDLKEKDK GFSKLGGNVD GVVIEEKEWS EEDLGLLRKL IVKYPVGKPK  360
RWEVIAEGFK GRHSVESVIS KAKSLGKEKP VDSDSYSKFL KDRKAVDKRV EDENVAVGKE  420
ESGGEVITWS STEDIALLNA LKAFPKEVAM RWEKIAAAVP GKTKAACMKR VSELKKEFRS  480
SKAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	GGKEEKGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45420.1	3e-64	MYB_related family protein