PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62018653-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 739aa    MW: 82053.2 Da    PI: 6.4147
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62018653-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-18121171151
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNr 51 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNr
  AUR62018653-RA 121 KKRYHRHTARQIQEMEALFRECPHPDDKQRMKLSQDLGLKPRQVKFWFQNR 171
                     688899********************************************9 PP
2START154.96.8e-492534862206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                     la + ++el+k+  ++ep+W++ s  +n++evl  +e s+                   ++ea r++++v+m++ +lv ++ld + +W e ++  
  AUR62018653-RA 253 LAMSSMDELLKMCHVNEPLWFRNS--SNSMEVLNMEEYSRMfpwphhhadplkqhyneLRTEATRDKALVIMNSINLVDSFLDAN-KWMELFPsi 344
                     677899******************..8888888888887778889999*************************************.********* PP

                     ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTC CS
           START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksng 160
                       +a+t++ + +g      gal+lm+aelq+lsplvp R+ +f+Ry+    ++g w+ivd  vd+ q   +  + s+ R ++++Sg++i++++ng
  AUR62018653-RA 345 vsRAKTVQILAPGasghasGALHLMFAELQVLSPLVPtRETYFLRYCHHnAEEGMWAIVDFPVDNFQGSLQlsQNSIPRYRKRTSGCIIQDMPNG 439
                     *************************************************99****************99889899999***************** PP

                     EEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 161 hskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +skv+wveh+++ +  p h+ + + v+s +a+gak+w+a lqrqce+
  AUR62018653-RA 440 YSKVIWVEHAEVLEEKPiHQTFDQYVHSAMAFGAKRWLAILQRQCER 486
                     ***********9999999***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    
MYGDCQVAAA LPSTMGENGM SSTPDCSSLF ASSLRNPNNH NHNHHHVNAF TFMASLPPAF  60
HPFPTILPVK EERGKEEMVE SLSGSELNME GQGGLSGNEL ESLSEDPLNP NQLQPSQSGK  120
KKRYHRHTAR QIQEMEALFR ECPHPDDKQR MKLSQDLGLK PRQVKFWFQN RLLRSLVCPG  180
CGGGSILGEV EYDEQQLRLE NARLKEEYDR VCAVASRYTG RSLQSLGPSP PPAALLPPPS  240
LDLDMGMPLA MELAMSSMDE LLKMCHVNEP LWFRNSSNSM EVLNMEEYSR MFPWPHHHAD  300
PLKQHYNELR TEATRDKALV IMNSINLVDS FLDANKWMEL FPSIVSRAKT VQILAPGASG  360
HASGALHLMF AELQVLSPLV PTRETYFLRY CHHNAEEGMW AIVDFPVDNF QGSLQLSQNS  420
IPRYRKRTSG CIIQDMPNGY SKVIWVEHAE VLEEKPIHQT FDQYVHSAMA FGAKRWLAIL  480
QRQCERVASL MARNVSDLGV IQSPEARKNF MKLAQRMIRT LSVNISTSGG QSWTALSESA  540
DDTVRITTRK IMEPGQPNGL ILCAVSTTWL PYSHDRVFDL LKNEYRRSQL EALSNGSSLH  600
EVAHIANGSH PGNCISLFRI NVASNSSQNV ELMLQESCTD PSGSLVVYAT MEVDYIQLVM  660
SGEDPSCIPL LPTGFSIIPL GQNNITPDAT NNTDGQSSSS NMGGGCLLTV GIQVHASASP  720
NAKLNLSSVN AINNHICSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein