PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62018324-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 276aa    MW: 31208.9 Da    PI: 6.9411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62018324-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +++ +v  +G g+W+ ++++ g++R++k+c++rw +yl
   AUR62018324-RA 14 KGLWTPEEDAKILAYVSNHGVGNWTQVPKKAGLNRCGKSCRLRWTNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding513.4e-1669110346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +T++E++l++++++  G++ W++Ia++++ gRt++++k++w++
   AUR62018324-RA  69 EFTEQEEQLIIQYHAAIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110
                      69******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MGRPPCCDKA NVKKGLWTPE EDAKILAYVS NHGVGNWTQV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHEEF TEQEEQLIIQ YHAAIGSRWS LIAKHLPGRT DNDVKNYWNT KLKKKLAKMG  120
IDPVTHKPIS KILSDYESIS CLSNNHQIRS LDQNITNSFS SQSYSWGQKN SVDPLLVTDI  180
TEEEHSYQGF LAADSPPQIQ EKSSQFQLIG ANHSNSKVTD DKFGMPESKS AAKNTVTSSY  240
YDYEPSSVNS FVKTLLDRDN EIQLDFPAFD DILDY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.17e-79MYB family protein