PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62018242-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family FAR1
Protein Properties Length: 289aa    MW: 32814.1 Da    PI: 10.4375
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62018242-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.27.4e-102100286
            FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                     ++++Y+k+ GF v+ s+  ++   ++ +e+ + t++C + g + +++kk           +e+   +r++++++C+ kl  k ++ g+w+++k +
  AUR62018242-RA   2 YFRSYGKQEGFGVVCSSGATKgrgTNAKETRNMTWTCECFGLPGRKSKKsgstfvsdsqiSEEVCMKRKSKKVSCHVKLYAKVNEVGEWVIDKAV 96 
                     799***********99988887778889999***********999999999****99887777788***************************** PP

            FAR1  83 leHn 86 
                      +H 
  AUR62018242-RA  97 VDHQ 100
                     9995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MYFRSYGKQE GFGVVCSSGA TKGRGTNAKE TRNMTWTCEC FGLPGRKSKK SGSTFVSDSQ  60
ISEEVCMKRK SKKVSCHVKL YAKVNEVGEW VIDKAVVDHQ GHNPTPGKSK NITKFRQKFL  120
MDNPHIVQQL LNDRKAGFIR TPSSVCLAKE KDSTTSTQGQ GSCDGVQEVI LMKDPPLPKR  180
LAHRTTDSRY LILRVFRTWY LTDRSVWVAF KCWTGKAQLG ISRPLVVEVN SSMDPKFLLN  240
MVSMFRILNF HGVRFLLGCM DGKRLIHLYQ LHQDKQGKFL YYLNLSRL*