PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62017171-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 317aa    MW: 35159.8 Da    PI: 7.2372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62017171-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.2e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
   AUR62017171-RA 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding45.71.5e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ E+e + ++++  G++ W++Ia+ ++ gRt++++k++w++
   AUR62017171-RA  68 GQFSQAEEETIMKLHAVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MGRIPCCEKE NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SQAEEETIMK LHAVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLTGMG  120
IDPVTHKSFS HLMAEIATTL GPPQVANLTE AALGCFKDEM LHLLTKKRID FQLQPTSSQG  180
NMNATYGMST KPDAKEDTVV KIKLGLSRAI QQPDMIISNK PWETTVGATQ THVNGGCNAF  240
TAFQYGQSAF IAEEDGSPWN QSMCSTAGDQ LGHLKLEDEN GEESEGGKEI RNGSSIFSTD  300
SILWDLPSDD LMNPMV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-116MYB family protein